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Aliases for LOC105374888 Gene

Subcategory (RNA class) for LOC105374888 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374888 Gene

  • Uncharacterized LOC105374888 3
  • AL133351.1 5

External Ids for LOC105374888 Gene

Previous GeneCards Identifiers for LOC105374888 Gene

  • GC06U902960

Summaries for LOC105374888 Gene

GeneCards Summary for LOC105374888 Gene

LOC105374888 (Uncharacterized LOC105374888) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374888 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374888 Gene

Genomics for LOC105374888 Gene

GeneHancer (GH) Regulatory Elements for LOC105374888 Gene

Promoters and enhancers for LOC105374888 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J002998 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 704.4 -1.3 -1279 4.1 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 GLIS1 LOC105374888 NQO2 SERPINB6 GC06P002980 HTATSF1P2
GH06J002999 Enhancer 0.9 ENCODE dbSUPER 650.7 +1.0 1010 0.1 CTCF ARID4B CEBPG RAD21 CC2D1A GATA3 SMC3 ATF7 PRDM10 ZNF654 LOC105374888 NQO2 GC06P002980
GH06J002979 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.5 +13.2 13172 13.6 CLOCK FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ZNF263 NQO2 LINC01011 RIPK1 PSMG4 ENSG00000228170 WRNIP1 ENSG00000272320 LOC105374888 SERPINB9 SERPINB6
GH06J002890 Enhancer 0.9 ENCODE dbSUPER 5.2 +107.3 107267 3 HDGF PKNOX1 BACH1 ZNF664 ZFHX2 POLR2A ZNF143 ZNF207 IKZF2 EGR2 SERPINB9 LINC01011 NQO2 LOC105374888 SERPINB9P1 LOC101927730
GH06J002993 Enhancer 1.1 ENCODE dbSUPER 0.4 +5.2 5163 0.5 HDGF FOXA2 ARNT ARID4B ZNF48 TCF12 NFKBIZ SP5 MIER2 PPARG SERPINB6 NQO2 LOC105374888 GC06P002980
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374888 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374888 Gene

Genomic Locations for LOC105374888 Gene
chr6:2,989,722-2,999,292
(GRCh38/hg38)
Size:
9,571 bases
Orientation:
Minus strand
chr6:2,989,960-2,999,368
(GRCh37/hg19)
Size:
9,409 bases
Orientation:
Minus strand

Genomic View for LOC105374888 Gene

Genes around LOC105374888 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374888 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374888 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374888 Gene

Proteins for LOC105374888 Gene

Post-translational modifications for LOC105374888 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374888 Gene

Domains & Families for LOC105374888 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374888 Gene

Function for LOC105374888 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374888 Gene

Localization for LOC105374888 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374888 Gene

Pathways & Interactions for LOC105374888 Gene

SuperPathways for LOC105374888 Gene

No Data Available

Interacting Proteins for LOC105374888 Gene

Gene Ontology (GO) - Biological Process for LOC105374888 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374888 Gene

Drugs & Compounds for LOC105374888 Gene

No Compound Related Data Available

Transcripts for LOC105374888 Gene

mRNA/cDNA for LOC105374888 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374888 Gene

No ASD Table

Relevant External Links for LOC105374888 Gene

GeneLoc Exon Structure for
LOC105374888

Expression for LOC105374888 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374888 Gene

Orthologs for LOC105374888 Gene

Evolution for LOC105374888 Gene

ENSEMBL:
Gene Tree for LOC105374888 (if available)
TreeFam:
Gene Tree for LOC105374888 (if available)

No data available for Orthologs for LOC105374888 Gene

Paralogs for LOC105374888 Gene

No data available for Paralogs for LOC105374888 Gene

Variants for LOC105374888 Gene

Sequence variations from dbSNP and Humsavar for LOC105374888 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000150569 -- 2,994,522(-) C/T intron_variant
rs1000386937 -- 3,000,839(-) C/G upstream_transcript_variant
rs1000785461 -- 2,995,859(-) A/T intron_variant
rs1001391811 -- 2,994,459(-) A/G intron_variant
rs1001400982 -- 2,990,443(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374888 Gene

Disorders for LOC105374888 Gene

No disorders were found for LOC105374888 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374888 Gene

Publications for LOC105374888 Gene

No publications were found for LOC105374888 Gene.

Products for LOC105374888 Gene

Sources for LOC105374888 Gene

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