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Aliases for LOC105374887 Gene

Subcategory (RNA class) for LOC105374887 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374887 Gene

  • Uncharacterized LOC105374887 3

External Ids for LOC105374887 Gene

Previous GeneCards Identifiers for LOC105374887 Gene

  • GC06U902880

Summaries for LOC105374887 Gene

GeneCards Summary for LOC105374887 Gene

LOC105374887 (Uncharacterized LOC105374887) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374887 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374887 Gene

Genomics for LOC105374887 Gene

GeneHancer (GH) Regulatory Elements for LOC105374887 Gene

Promoters and enhancers for LOC105374887 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I002939 Enhancer 1.2 Ensembl ENCODE dbSUPER 550.8 +0.1 123 1.5 PKNOX1 SMAD1 BMI1 BATF KLF5 IRF4 ATF7 ETV6 IKZF2 RUNX3 LOC105374887 SERPINB9 SERPINB6 ENSG00000232999 LINC01011 NQO2 GC06M002906
GH06I002938 Enhancer 0.8 dbSUPER 550.8 -1.6 -1595 0.6 CTCF MAX CEBPG KMT2B DNMT3B ZSCAN9 TEAD3 ATF7 ZNF444 E2F6 LOC105374887 SERPINB9 ENSG00000232999 SERPINB6 NQO2 LINC01011 GC06M002906 ENSG00000228365
GH06I002927 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.0 -9955 5 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 IRF4 SLC30A9 ZNF766 SERPINB9 SERPINB6 NQO2 LINC01011 WRNIP1 SERPINB1 ENSG00000272277 RIPK1 LOC105374887 ENSG00000228365
GH06I002925 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -13.8 -13838 2 HDAC1 ELF3 ATF1 RB1 MLX ZFP64 ZBTB40 ZNF766 ATF7 CREM SERPINB9 LINC01011 NQO2 SERPINB6 WRNIP1 SERPINB1 ENSG00000228365 LOC105374887 GC06M002906
GH06I002936 Enhancer 0.6 ENCODE 0.8 -3.1 -3094 1.2 CC2D1A ZNF316 NFATC3 NFYB NFYC ZBTB33 RUNX3 EMSY CHAMP1 SERPINB9 SERPINB6 ENSG00000232999 NQO2 LINC01011 LOC105374887 GC06M002906 ENSG00000228365
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374887 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374887 Gene

Genomic Locations for LOC105374887 Gene
chr6:2,940,398-2,941,406
(GRCh38/hg38)
Size:
1,009 bases
Orientation:
Plus strand

Genomic View for LOC105374887 Gene

Genes around LOC105374887 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374887 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374887 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374887 Gene

Proteins for LOC105374887 Gene

Post-translational modifications for LOC105374887 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374887 Gene

Domains & Families for LOC105374887 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374887 Gene

Function for LOC105374887 Gene

Phenotypes From GWAS Catalog for LOC105374887 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374887 Gene

Localization for LOC105374887 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374887 Gene

Pathways & Interactions for LOC105374887 Gene

SuperPathways for LOC105374887 Gene

No Data Available

Interacting Proteins for LOC105374887 Gene

Gene Ontology (GO) - Biological Process for LOC105374887 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374887 Gene

Drugs & Compounds for LOC105374887 Gene

No Compound Related Data Available

Transcripts for LOC105374887 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374887 Gene

No ASD Table

Relevant External Links for LOC105374887 Gene

GeneLoc Exon Structure for
LOC105374887

No data available for mRNA/cDNA for LOC105374887 Gene

Expression for LOC105374887 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374887 Gene

Orthologs for LOC105374887 Gene

No data available for Orthologs and Evolution for LOC105374887 Gene

Paralogs for LOC105374887 Gene

No data available for Paralogs for LOC105374887 Gene

Variants for LOC105374887 Gene

Sequence variations from dbSNP and Humsavar for LOC105374887 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000102427 -- 2,938,986(+) G/A upstream_transcript_variant
rs1000474775 -- 2,938,809(+) G/T upstream_transcript_variant
rs1000539233 -- 2,938,907(+) C/T upstream_transcript_variant
rs1000653672 -- 2,938,726(+) A/G/T upstream_transcript_variant
rs1000684603 -- 2,938,613(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374887 Gene

Disorders for LOC105374887 Gene

No disorders were found for LOC105374887 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374887 Gene

Publications for LOC105374887 Gene

No publications were found for LOC105374887 Gene.

Products for LOC105374887 Gene

Sources for LOC105374887 Gene

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