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Aliases for LOC105374880 Gene

Subcategory (RNA class) for LOC105374880 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105374880 Gene

  • Uncharacterized LOC105374880 3
  • AL034346.1 5

External Ids for LOC105374880 Gene

Previous GeneCards Identifiers for LOC105374880 Gene

  • GC06U903075

Summaries for LOC105374880 Gene

GeneCards Summary for LOC105374880 Gene

LOC105374880 (Uncharacterized LOC105374880) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374880 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374880 Gene

Genomics for LOC105374880 Gene

GeneHancer (GH) Regulatory Elements for LOC105374880 Gene

Promoters and enhancers for LOC105374880 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I001381 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.0 19 15.6 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 IRF4 ZNF213 ZNF143 FOS FOXF2 GC06P001387 GC06M001386 MIR6720 LOC105374880 GC06M001396 GC06P001380
GH06I001309 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 5.1 +75.4 75351 8.6 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 PAF1 FOXQ1 EXOC2 LOC105374880 GC06M001309 LINC01394
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374880 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374880 Gene

Genomic Locations for LOC105374880 Gene
chr6:1,383,790-1,389,470
(GRCh38/hg38)
Size:
5,681 bases
Orientation:
Minus strand
chr6:1,384,025-1,385,301
(GRCh37/hg19)

Genomic View for LOC105374880 Gene

Genes around LOC105374880 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374880 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374880 Gene

Proteins for LOC105374880 Gene

Post-translational modifications for LOC105374880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374880 Gene

Domains & Families for LOC105374880 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374880 Gene

Function for LOC105374880 Gene

Phenotypes From GWAS Catalog for LOC105374880 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374880 Gene

Localization for LOC105374880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374880 Gene

Pathways & Interactions for LOC105374880 Gene

SuperPathways for LOC105374880 Gene

No Data Available

Interacting Proteins for LOC105374880 Gene

Gene Ontology (GO) - Biological Process for LOC105374880 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374880 Gene

Drugs & Compounds for LOC105374880 Gene

No Compound Related Data Available

Transcripts for LOC105374880 Gene

mRNA/cDNA for LOC105374880 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374880 Gene

No ASD Table

Relevant External Links for LOC105374880 Gene

GeneLoc Exon Structure for
LOC105374880

Expression for LOC105374880 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374880 Gene

Orthologs for LOC105374880 Gene

Evolution for LOC105374880 Gene

ENSEMBL:
Gene Tree for LOC105374880 (if available)
TreeFam:
Gene Tree for LOC105374880 (if available)

No data available for Orthologs for LOC105374880 Gene

Paralogs for LOC105374880 Gene

No data available for Paralogs for LOC105374880 Gene

Variants for LOC105374880 Gene

Sequence variations from dbSNP and Humsavar for LOC105374880 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs587777898 not-provided, not provided 1,390,846(-) C/G upstream_transcript_variant
rs1000245913 -- 1,389,375(-) C/A non_coding_transcript_variant
rs1000461316 -- 1,383,755(-) T/C downstream_transcript_variant
rs1000527471 -- 1,390,903(-) C/T upstream_transcript_variant
rs1000536999 -- 1,390,736(-) G/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374880 Gene

Disorders for LOC105374880 Gene

Additional Disease Information for LOC105374880

No disorders were found for LOC105374880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105374880 Gene

Publications for LOC105374880 Gene

No publications were found for LOC105374880 Gene.

Products for LOC105374880 Gene

Sources for LOC105374880 Gene

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