Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105374853 Gene

Subcategory (RNA class) for LOC105374853 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374853 Gene

  • Uncharacterized LOC105374853 3

External Ids for LOC105374853 Gene

Previous GeneCards Identifiers for LOC105374853 Gene

  • GC02U903695

Summaries for LOC105374853 Gene

GeneCards Summary for LOC105374853 Gene

LOC105374853 (Uncharacterized LOC105374853) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374853 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374853 Gene

Genomics for LOC105374853 Gene

GeneHancer (GH) Regulatory Elements for LOC105374853 Gene

Promoters and enhancers for LOC105374853 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I088735 Enhancer 0.7 ENCODE 0.4 -12.2 -12249 0.2 HDAC1 MEIS2 PKNOX1 SIN3A CTBP1 ZNF316 EGR1 FOSL2 NFE2 FOS GC02P088737 LOC105374853 RPIA
GH02I088736 Enhancer 0.6 ENCODE 0.4 -13.6 -13633 2.2 PKNOX1 FOXA2 JUN JUNB BATF NR2F2 FOXA1 POLR2A BCL6 FOSL2 GC02P088737 ANKRD36BP2 LOC105374853 RPIA
GH02I088697 Enhancer 0.7 Ensembl ENCODE 0.3 +25.1 25136 3 SOX13 TFAP4 RCOR2 MLLT1 ANKRD36BP2 RPIA LOC105374853
GH02I088693 Enhancer 0.5 Ensembl ENCODE 0.3 +29.7 29688 1.2 TEAD3 ANKRD36BP2 RPIA LOC105374853
GH02I088729 Enhancer 0.3 ENCODE 0.4 -5.7 -5718 0.2 POLR2A ANKRD36BP2 GC02P088737 LOC105374853 RPIA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374853 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374853 Gene

Genomic Locations for LOC105374853 Gene
chr2:88,714,478-88,723,820
(GRCh38/hg38)
Size:
9,343 bases
Orientation:
Minus strand

Genomic View for LOC105374853 Gene

Genes around LOC105374853 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374853 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374853 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374853 Gene

Proteins for LOC105374853 Gene

Post-translational modifications for LOC105374853 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374853 Gene

Domains & Families for LOC105374853 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374853 Gene

Function for LOC105374853 Gene

Phenotypes From GWAS Catalog for LOC105374853 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374853 Gene

Localization for LOC105374853 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374853 Gene

Pathways & Interactions for LOC105374853 Gene

SuperPathways for LOC105374853 Gene

No Data Available

Interacting Proteins for LOC105374853 Gene

Gene Ontology (GO) - Biological Process for LOC105374853 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374853 Gene

Drugs & Compounds for LOC105374853 Gene

No Compound Related Data Available

Transcripts for LOC105374853 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374853 Gene

No ASD Table

Relevant External Links for LOC105374853 Gene

GeneLoc Exon Structure for
LOC105374853

No data available for mRNA/cDNA for LOC105374853 Gene

Expression for LOC105374853 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374853 Gene

Orthologs for LOC105374853 Gene

No data available for Orthologs and Evolution for LOC105374853 Gene

Paralogs for LOC105374853 Gene

No data available for Paralogs for LOC105374853 Gene

Variants for LOC105374853 Gene

Sequence variations from dbSNP and Humsavar for LOC105374853 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000000662 -- 88,721,740(-) A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000023391 -- 88,721,617(-) A/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000925676 -- 88,715,420(-) T/C intron_variant, non_coding_transcript_variant
rs1000940159 -- 88,717,279(-) G/A intron_variant
rs1001213722 -- 88,722,104(-) C/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374853 Gene

Disorders for LOC105374853 Gene

No disorders were found for LOC105374853 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374853 Gene

Publications for LOC105374853 Gene

No publications were found for LOC105374853 Gene.

Products for LOC105374853 Gene

Sources for LOC105374853 Gene

Content
Loading form....