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Aliases for LOC105374845 Gene

Subcategory (RNA class) for LOC105374845 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374845 Gene

  • Uncharacterized LOC105374845 3
  • AC015971.1 5

External Ids for LOC105374845 Gene

Previous GeneCards Identifiers for LOC105374845 Gene

  • GC02U903339

Summaries for LOC105374845 Gene

GeneCards Summary for LOC105374845 Gene

LOC105374845 (Uncharacterized LOC105374845) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105374845 include Hepatocellular Carcinoma.

Additional gene information for LOC105374845 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374845 Gene

Genomics for LOC105374845 Gene

GeneHancer (GH) Regulatory Elements for LOC105374845 Gene

Promoters and enhancers for LOC105374845 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J086562 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 662.5 +1.1 1141 2 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 MEF2D ZNF610 CHMP3 LOC105374845 LOC102724642 LOC100420889 SNORD94 NDUFB4P5 ENSG00000231259 C2orf68 USP39 MRPL35
GH02J086193 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 31 -366.6 -366620 3.9 ZFP64 DMAP1 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 ZNF610 IMMT ENSG00000273080 MRPL35 GC02P086196 LOC102724642 SNORD94 ENSG00000231259 LOC100420889 KDM3A USP39
GH02J086440 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 20.8 -120.0 -120043 3.6 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 KDM3A GC02M086437 LOC102724642 SNORD94 C2orf68 ENSG00000231259 USP39 LOC100420889 LOC105374845 PTCD3
GH02J086198 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 12.3 -362.5 -362467 2 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF143 DEK SP3 MRPL35 LOC102724642 IMMT SNORD94 ENSG00000231259 LOC100420889 LOC100996506 LOC105374845 KDM3A C2orf68
GH02J086104 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.8 -455.8 -455750 3.2 HDGF PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 POLR1A PTCD3 SNORD94 ENSG00000231259 LOC105374845 C2orf68 LOC100996506 USP39 ELMOD3 MRPL35
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374845 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374845 Gene

Genomic Locations for LOC105374845 Gene
chr2:86,562,068-86,620,173
(GRCh38/hg38)
Size:
58,106 bases
Orientation:
Plus strand
chr2:86,789,193-86,845,889
(GRCh37/hg19)
Size:
56,697 bases
Orientation:
Plus strand

Genomic View for LOC105374845 Gene

Genes around LOC105374845 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374845 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374845 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374845 Gene

Proteins for LOC105374845 Gene

Post-translational modifications for LOC105374845 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374845 Gene

Domains & Families for LOC105374845 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374845 Gene

Function for LOC105374845 Gene

Phenotypes From GWAS Catalog for LOC105374845 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374845 Gene

Localization for LOC105374845 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374845 Gene

Pathways & Interactions for LOC105374845 Gene

SuperPathways for LOC105374845 Gene

No Data Available

Interacting Proteins for LOC105374845 Gene

Gene Ontology (GO) - Biological Process for LOC105374845 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374845 Gene

Drugs & Compounds for LOC105374845 Gene

No Compound Related Data Available

Transcripts for LOC105374845 Gene

mRNA/cDNA for LOC105374845 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374845 Gene

No ASD Table

Relevant External Links for LOC105374845 Gene

GeneLoc Exon Structure for
LOC105374845

Expression for LOC105374845 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374845 Gene

Orthologs for LOC105374845 Gene

Evolution for LOC105374845 Gene

ENSEMBL:
Gene Tree for LOC105374845 (if available)
TreeFam:
Gene Tree for LOC105374845 (if available)

No data available for Orthologs for LOC105374845 Gene

Paralogs for LOC105374845 Gene

No data available for Paralogs for LOC105374845 Gene

Variants for LOC105374845 Gene

Sequence variations from dbSNP and Humsavar for LOC105374845 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000045302 -- 86,564,178(+) T/C intron_variant
rs1000079966 -- 86,586,310(+) A/T intron_variant
rs1000148956 -- 86,603,554(+) T/C intron_variant
rs1000151460 -- 86,611,207(+) C/G/T intron_variant
rs1000209827 -- 86,604,068(+) C/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374845 Gene

Disorders for LOC105374845 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105374845 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC105374845

genes like me logo Genes that share disorders with LOC105374845: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC105374845 Gene

Publications for LOC105374845 Gene

No publications were found for LOC105374845 Gene.

Products for LOC105374845 Gene

Sources for LOC105374845 Gene

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