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Aliases for LOC105374839 Gene

Subcategory (RNA class) for LOC105374839 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374839 Gene

  • Uncharacterized LOC105374839 3

External Ids for LOC105374839 Gene

Previous GeneCards Identifiers for LOC105374839 Gene

  • GC02U903658

Summaries for LOC105374839 Gene

GeneCards Summary for LOC105374839 Gene

LOC105374839 (Uncharacterized LOC105374839) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374839 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374839 Gene

Genomics for LOC105374839 Gene

GeneHancer (GH) Regulatory Elements for LOC105374839 Gene

Promoters and enhancers for LOC105374839 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J085243 Enhancer 0.8 ENCODE dbSUPER 650.7 +1.8 1818 0.2 CTCF SP5 ZNF189 REST MIER2 ZIC2 RAD21 ZSCAN21 XRCC5 PRDM10 LOC105374839 RNU6-674P TCF7L1 TGOLN2 ENSG00000230299
GH02J085236 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.1 -4142 1.9 ZFP64 MAX ZNF140 ZNF266 SIN3A ZBTB40 ZNF697 ZNF664 POLR2A ZNF547 SNORD94 C2orf68 ELMOD3 LOC100996506 USP39 RNU6-674P TCF7L1 POLR1A MAT2A SH2D6
GH02J085254 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +15.2 15189 6.3 NFIB ZNF121 RCOR1 SP5 GATAD2B REST NR2F2 SP1 ZNF217 ETV4 TCF7L1 RNU6-674P ATOH8 ENSG00000230299 LOC105374839
GH02J085248 Enhancer 0.7 ENCODE dbSUPER 0.7 +4.4 4378 0.2 ZFHX2 PKNOX1 L3MBTL2 FOXP2 RCOR1 CHD2 EGR2 TCF7L1 RNU6-674P LOC105374839 ENSG00000230299
GH02J085247 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +6.4 6426 3.9 PKNOX1 SIN3A RAD21 ZFHX2 POLR2A EGR1 PRDM10 RCOR1 FOSL2 FOS TCF7L1 RNU6-674P LOC105374839 ENSG00000230299
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374839 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374839 Gene

Genomic Locations for LOC105374839 Gene
chr2:85,242,035-85,253,179
(GRCh38/hg38)
Size:
11,145 bases
Orientation:
Plus strand

Genomic View for LOC105374839 Gene

Genes around LOC105374839 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374839 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374839 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374839 Gene

Proteins for LOC105374839 Gene

Post-translational modifications for LOC105374839 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374839 Gene

Domains & Families for LOC105374839 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374839 Gene

Function for LOC105374839 Gene

Phenotypes From GWAS Catalog for LOC105374839 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374839 Gene

Localization for LOC105374839 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374839 Gene

Pathways & Interactions for LOC105374839 Gene

SuperPathways for LOC105374839 Gene

No Data Available

Interacting Proteins for LOC105374839 Gene

Gene Ontology (GO) - Biological Process for LOC105374839 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374839 Gene

Drugs & Compounds for LOC105374839 Gene

No Compound Related Data Available

Transcripts for LOC105374839 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374839 Gene

No ASD Table

Relevant External Links for LOC105374839 Gene

GeneLoc Exon Structure for
LOC105374839

No data available for mRNA/cDNA for LOC105374839 Gene

Expression for LOC105374839 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374839 Gene

Orthologs for LOC105374839 Gene

No data available for Orthologs and Evolution for LOC105374839 Gene

Paralogs for LOC105374839 Gene

No data available for Paralogs for LOC105374839 Gene

Variants for LOC105374839 Gene

Sequence variations from dbSNP and Humsavar for LOC105374839 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000078511 -- 85,255,359(+) A/C/T non_coding_transcript_variant
rs1000157813 -- 85,241,131(+) A/G upstream_transcript_variant
rs1000517433 -- 85,251,027(+) C/T intron_variant
rs1000572829 -- 85,251,285(+) T/C intron_variant
rs1000642042 -- 85,245,637(+) C/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374839 Gene

Disorders for LOC105374839 Gene

No disorders were found for LOC105374839 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374839 Gene

Publications for LOC105374839 Gene

No publications were found for LOC105374839 Gene.

Products for LOC105374839 Gene

Sources for LOC105374839 Gene

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