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Aliases for LOC105374807 Gene

Subcategory (RNA class) for LOC105374807 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374807 Gene

  • Uncharacterized LOC105374807 3

External Ids for LOC105374807 Gene

Previous GeneCards Identifiers for LOC105374807 Gene

  • GC02U903836

Summaries for LOC105374807 Gene

GeneCards Summary for LOC105374807 Gene

LOC105374807 (Uncharacterized LOC105374807) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105374807 include Microcephaly-Capillary Malformation Syndrome.

Additional gene information for LOC105374807 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374807 Gene

Genomics for LOC105374807 Gene

GeneHancer (GH) Regulatory Elements for LOC105374807 Gene

Promoters and enhancers for LOC105374807 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J073828 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.8 757 4 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 SLC30A9 POLR2B E2F8 ZNF207 STAMBP LOC105374807 TPRKB ALMS1P1
GH02J073832 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.7 -2.2 -2186 0.9 SRF NFATC3 TAL1 ZNF592 ZNF316 POLR2A NFYB ZFP36 FOS STAMBP LOC105374807 LOC100420774
GH02J073841 Enhancer 0.9 ENCODE dbSUPER 0.4 -11.6 -11647 2 FOXA2 TAL1 ERF ZNF205 TEAD3 CREM MAFK GATAD2A TEAD1 FOXA3 ACTG2 TET3 BOLA3-AS1 BOLA3 ENSG00000217702 SLC4A5 STAMBP ALMS1P1 LOC105374807 LOC100420774
GH02J073824 Enhancer 0.7 ENCODE 0.4 +6.7 6709 0.2 CTCF IRF2 ERF ZSCAN9 RAD21 CC2D1A ZNF143 SMC3 PRDM10 RUNX3 STAMBP LOC105374807 C2orf78
GH02J073821 Enhancer 0.7 FANTOM5 0.4 +9.4 9370 0.1 PKNOX1 BACH1 EBF1 BATF IRF4 RELA EED IKZF2 ZNF687 JUNB WBP1 SMYD5 ENSG00000159239 ALMS1 MOB1A MTHFD2 LOC105374807 STAMBP C2orf78
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374807 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374807 Gene

Genomic Locations for LOC105374807 Gene
chr2:73,820,775-73,830,838
(GRCh38/hg38)
Size:
10,064 bases
Orientation:
Minus strand

Genomic View for LOC105374807 Gene

Genes around LOC105374807 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374807 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374807 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374807 Gene

Proteins for LOC105374807 Gene

Post-translational modifications for LOC105374807 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374807 Gene

Domains & Families for LOC105374807 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374807 Gene

Function for LOC105374807 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374807 Gene

Localization for LOC105374807 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374807 Gene

Pathways & Interactions for LOC105374807 Gene

SuperPathways for LOC105374807 Gene

No Data Available

Interacting Proteins for LOC105374807 Gene

Gene Ontology (GO) - Biological Process for LOC105374807 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374807 Gene

Drugs & Compounds for LOC105374807 Gene

No Compound Related Data Available

Transcripts for LOC105374807 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374807 Gene

No ASD Table

Relevant External Links for LOC105374807 Gene

GeneLoc Exon Structure for
LOC105374807

No data available for mRNA/cDNA for LOC105374807 Gene

Expression for LOC105374807 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374807 Gene

Orthologs for LOC105374807 Gene

No data available for Orthologs and Evolution for LOC105374807 Gene

Paralogs for LOC105374807 Gene

No data available for Paralogs for LOC105374807 Gene

Variants for LOC105374807 Gene

Sequence variations from dbSNP and Humsavar for LOC105374807 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs143739249 pathogenic, Microcephaly-capillary malformation syndrome, not provided 73,830,968(-) C/T upstream_transcript_variant
rs397509387 conflicting-interpretations-of-pathogenicity, Microcephaly-capillary malformation syndrome 73,830,981(-) A/G upstream_transcript_variant
rs886043494 pathogenic, Microcephaly-capillary malformation syndrome 73,830,962(-) TAC/AA upstream_transcript_variant
rs919629 likely-benign, not specified 73,830,868(-) T/A/C upstream_transcript_variant
rs1000075425 -- 73,832,570(-) A/C/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374807 Gene

Disorders for LOC105374807 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105374807 Gene - From: GeneCards

Disorder Aliases PubMed IDs
microcephaly-capillary malformation syndrome
  • miccap
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105374807: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374807 Gene

Publications for LOC105374807 Gene

No publications were found for LOC105374807 Gene.

Products for LOC105374807 Gene

Sources for LOC105374807 Gene

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