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Aliases for LOC105374800 Gene

Subcategory (RNA class) for LOC105374800 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374800 Gene

  • Uncharacterized LOC105374800 3

External Ids for LOC105374800 Gene

Previous GeneCards Identifiers for LOC105374800 Gene

  • GC02U903593

Summaries for LOC105374800 Gene

GeneCards Summary for LOC105374800 Gene

LOC105374800 (Uncharacterized LOC105374800) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374800 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374800 Gene

Genomics for LOC105374800 Gene

GeneHancer (GH) Regulatory Elements for LOC105374800 Gene

Promoters and enhancers for LOC105374800 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I073069 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -15.4 -15428 3.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 SFXN5 DUSP11 CCT7 ENSG00000273245 ALMS1 TPRKB SMYD5 DGUOK-AS1 RAB11FIP5 GC02M073119
GH02I073062 Enhancer 1.1 Ensembl ENCODE 0.4 -8.4 -8370 3.3 HDAC1 PKNOX1 ZNF335 ZNF121 GLIS2 ARID2 ZNF366 FOS ATF7 SMARCC1 EMX1 RAB11FIP5 LOC105374800 GC02M073119 PIR43769 SFXN5
GH02I073030 Enhancer 1.2 Ensembl ENCODE 0.3 +22.3 22347 4.5 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 FOS RXRA MXD4 RAB11FIP5 CCT7 SFXN5 LOC105374800 GC02P072995
GH02I073020 Enhancer 0.9 ENCODE 0.3 +34.3 34314 1.7 CLOCK FOXA2 MLX ARID4B ZNF48 SLC30A9 ATF7 FOS SP5 ZHX2 RAB11FIP5 SFXN5 EMX1 SPR GC02P072995 LOC105374800
GH02I073044 Enhancer 0.6 ENCODE 0.4 +10.8 10828 1.3 GATAD2A TFAP4 SAP130 NR2F1 ARID4B CEBPG RAD21 ZNF48 CEBPA SMAD4 RAB11FIP5 LOC105374800 SFXN5 GC02P072995
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374800 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374800 Gene

Genomic Locations for LOC105374800 Gene
chr2:73,053,329-73,055,511
(GRCh38/hg38)
Size:
2,183 bases
Orientation:
Minus strand

Genomic View for LOC105374800 Gene

Genes around LOC105374800 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374800 Gene

Proteins for LOC105374800 Gene

Post-translational modifications for LOC105374800 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374800 Gene

Domains & Families for LOC105374800 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374800 Gene

Function for LOC105374800 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374800 Gene

Localization for LOC105374800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374800 Gene

Pathways & Interactions for LOC105374800 Gene

SuperPathways for LOC105374800 Gene

No Data Available

Interacting Proteins for LOC105374800 Gene

Gene Ontology (GO) - Biological Process for LOC105374800 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374800 Gene

Drugs & Compounds for LOC105374800 Gene

No Compound Related Data Available

Transcripts for LOC105374800 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374800 Gene

No ASD Table

Relevant External Links for LOC105374800 Gene

GeneLoc Exon Structure for
LOC105374800

No data available for mRNA/cDNA for LOC105374800 Gene

Expression for LOC105374800 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374800 Gene

Orthologs for LOC105374800 Gene

No data available for Orthologs and Evolution for LOC105374800 Gene

Paralogs for LOC105374800 Gene

No data available for Paralogs for LOC105374800 Gene

Variants for LOC105374800 Gene

Sequence variations from dbSNP and Humsavar for LOC105374800 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000401866 -- 73,054,842(-) TAAGTA/TA non_coding_transcript_variant
rs1000758415 -- 73,053,898(-) C/A non_coding_transcript_variant
rs1000937001 -- 73,056,436(-) A/T upstream_transcript_variant
rs1002522660 -- 73,056,524(-) A/G upstream_transcript_variant
rs1002709789 -- 73,056,699(-) A/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374800 Gene

Disorders for LOC105374800 Gene

No disorders were found for LOC105374800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374800 Gene

Publications for LOC105374800 Gene

No publications were found for LOC105374800 Gene.

Products for LOC105374800 Gene

Sources for LOC105374800 Gene

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