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Aliases for LOC105374796 Gene

Subcategory (RNA class) for LOC105374796 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374796 Gene

  • Uncharacterized LOC105374796 3
  • AC007040.1 5

External Ids for LOC105374796 Gene

Previous GeneCards Identifiers for LOC105374796 Gene

  • GC02U903861

Summaries for LOC105374796 Gene

GeneCards Summary for LOC105374796 Gene

LOC105374796 (Uncharacterized LOC105374796) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374796 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374796 Gene

Genomics for LOC105374796 Gene

GeneHancer (GH) Regulatory Elements for LOC105374796 Gene

Promoters and enhancers for LOC105374796 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J070993 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 +0.2 209 2.8 FOXA2 ZFP64 ARID4B SIN3A YY1 ZNF143 SP3 SP5 ZHX2 REST TEX261 LOC105374796 ENSG00000258881 CLEC4F ANKRD53 ADD2
GH02J070727 Enhancer 0.7 ENCODE 10.6 -265.9 -265904 1.3 ZFP64 ZNF140 ZC3H11A CEBPB SIN3A REST ZNF623 ZNF781 ZNF518A ZNF697 TIA1 ANKRD53 TEX261 PCBP1-AS1 MPHOSPH10 ADD2 ZNF638 CLEC4F LOC105374796 GMCL1
GH02J071000 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.4 +7.3 7300 2 HDGF MLX ARID4B DMAP1 ZNF2 ZNF48 GLIS2 CBX5 ZNF213 ELK1 TEX261 ANKRD53 NAGK LOC105374796 ENSG00000258881 OR7E91P ENSG00000236469
GH02J070989 Promoter 0.5 EPDnew 0.7 -4.7 -4685 0.1 TEX261 LOC105374796 PIR41407 ENSG00000258881
GH02J070987 Promoter 0.5 EPDnew 0.4 -6.7 -6653 0.1 PIR48803 PIR41407 TEX261 ATP6V1B1-AS1 VAX2 ENSG00000258881 LOC105374796
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374796 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374796 Gene

Genomic Locations for LOC105374796 Gene
chr2:70,994,510-71,002,934
(GRCh38/hg38)
Size:
8,425 bases
Orientation:
Plus strand
chr2:71,221,573-71,229,884
(GRCh37/hg19)
Size:
8,312 bases
Orientation:
Plus strand

Genomic View for LOC105374796 Gene

Genes around LOC105374796 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374796 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374796 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374796 Gene

Proteins for LOC105374796 Gene

Post-translational modifications for LOC105374796 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374796 Gene

Domains & Families for LOC105374796 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374796 Gene

Function for LOC105374796 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374796 Gene

Localization for LOC105374796 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374796 Gene

Pathways & Interactions for LOC105374796 Gene

SuperPathways for LOC105374796 Gene

No Data Available

Interacting Proteins for LOC105374796 Gene

Gene Ontology (GO) - Biological Process for LOC105374796 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374796 Gene

Drugs & Compounds for LOC105374796 Gene

No Compound Related Data Available

Transcripts for LOC105374796 Gene

mRNA/cDNA for LOC105374796 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374796 Gene

No ASD Table

Relevant External Links for LOC105374796 Gene

GeneLoc Exon Structure for
LOC105374796

Expression for LOC105374796 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374796 Gene

Orthologs for LOC105374796 Gene

Evolution for LOC105374796 Gene

ENSEMBL:
Gene Tree for LOC105374796 (if available)
TreeFam:
Gene Tree for LOC105374796 (if available)

No data available for Orthologs for LOC105374796 Gene

Paralogs for LOC105374796 Gene

No data available for Paralogs for LOC105374796 Gene

Variants for LOC105374796 Gene

Sequence variations from dbSNP and Humsavar for LOC105374796 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000445644 -- 70,999,566(+) G/C upstream_transcript_variant
rs1001326134 -- 71,002,258(+) C/A intron_variant
rs1001657732 -- 71,002,416(+) G/A intron_variant
rs1002922139 -- 71,001,231(+) G/A non_coding_transcript_variant
rs1003328762 -- 70,999,687(+) A/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374796 Gene

Disorders for LOC105374796 Gene

No disorders were found for LOC105374796 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374796 Gene

Publications for LOC105374796 Gene

No publications were found for LOC105374796 Gene.

Products for LOC105374796 Gene

Sources for LOC105374796 Gene

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