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Aliases for LOC105374780 Gene

Subcategory (RNA class) for LOC105374780 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374780 Gene

  • Uncharacterized LOC105374780 3
  • AC012370.2 5

External Ids for LOC105374780 Gene

Previous GeneCards Identifiers for LOC105374780 Gene

  • GC02U903501

Summaries for LOC105374780 Gene

GeneCards Summary for LOC105374780 Gene

LOC105374780 (Uncharacterized LOC105374780) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374780 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374780 Gene

Genomics for LOC105374780 Gene

GeneHancer (GH) Regulatory Elements for LOC105374780 Gene

Promoters and enhancers for LOC105374780 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J065456 Enhancer 0.5 ENCODE 650.7 +0.3 309 0.2 FOSL1 JUND GLIS1 CREB1 ZSCAN29 FOS LOC105374780 ENSG00000204929
GH02J065429 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.7 +25.0 24992 4 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 SPRED2 ENSG00000204929 LOC105374780 AFTPH SERTAD2 SLC1A4 GC02P065427
GH02J065434 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 24.2 +19.6 19628 3.9 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 ENSG00000204929 LOC105374780 AFTPH SERTAD2 GC02P065427
GH02J065420 Enhancer 1.3 Ensembl ENCODE dbSUPER 20.5 +35.2 35211 2 HDAC1 PKNOX1 ZBTB40 TCF12 ZNF766 ZNF366 SCRT2 ETV6 ATF7 IKZF2 LOC105374780 ENSG00000204929 GC02P065427 SPRED2 ENSG00000232693
GH02J065369 Enhancer 1.4 Ensembl ENCODE dbSUPER 16.1 +84.5 84544 4.2 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 FOS SP5 GC02P065373 ENSG00000204929 LOC105374780 SPRED2 ENSG00000232693 GC02M065341
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374780 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374780 Gene

Genomic Locations for LOC105374780 Gene
chr2:65,439,888-65,456,571
(GRCh38/hg38)
Size:
16,684 bases
Orientation:
Minus strand
chr2:65,669,189-65,683,705
(GRCh37/hg19)
Size:
14,517 bases
Orientation:
Minus strand

Genomic View for LOC105374780 Gene

Genes around LOC105374780 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374780 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374780 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374780 Gene

Proteins for LOC105374780 Gene

Post-translational modifications for LOC105374780 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374780 Gene

Domains & Families for LOC105374780 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374780 Gene

Function for LOC105374780 Gene

Phenotypes From GWAS Catalog for LOC105374780 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374780 Gene

Localization for LOC105374780 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374780 Gene

Pathways & Interactions for LOC105374780 Gene

SuperPathways for LOC105374780 Gene

No Data Available

Interacting Proteins for LOC105374780 Gene

Gene Ontology (GO) - Biological Process for LOC105374780 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374780 Gene

Drugs & Compounds for LOC105374780 Gene

No Compound Related Data Available

Transcripts for LOC105374780 Gene

mRNA/cDNA for LOC105374780 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(9) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374780 Gene

No ASD Table

Relevant External Links for LOC105374780 Gene

GeneLoc Exon Structure for
LOC105374780

Expression for LOC105374780 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374780 Gene

Orthologs for LOC105374780 Gene

Evolution for LOC105374780 Gene

ENSEMBL:
Gene Tree for LOC105374780 (if available)
TreeFam:
Gene Tree for LOC105374780 (if available)

No data available for Orthologs for LOC105374780 Gene

Paralogs for LOC105374780 Gene

No data available for Paralogs for LOC105374780 Gene

Variants for LOC105374780 Gene

Sequence variations from dbSNP and Humsavar for LOC105374780 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000279787 -- 65,447,302(-) G/T genic_downstream_transcript_variant, intron_variant
rs1000370256 -- 65,442,159(-) G/A downstream_transcript_variant
rs1000405846 -- 65,457,549(-) G/A upstream_transcript_variant
rs1000805159 -- 65,445,473(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000882695 -- 65,453,433(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374780 Gene

Disorders for LOC105374780 Gene

No disorders were found for LOC105374780 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374780 Gene

Publications for LOC105374780 Gene

No publications were found for LOC105374780 Gene.

Products for LOC105374780 Gene

Sources for LOC105374780 Gene

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