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Aliases for LOC105374778 Gene

Subcategory (RNA class) for LOC105374778 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374778 Gene

  • Uncharacterized LOC105374778 3

External Ids for LOC105374778 Gene

Previous GeneCards Identifiers for LOC105374778 Gene

  • GC02U903780

Summaries for LOC105374778 Gene

GeneCards Summary for LOC105374778 Gene

LOC105374778 (Uncharacterized LOC105374778) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374778 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374778 Gene

Genomics for LOC105374778 Gene

GeneHancer (GH) Regulatory Elements for LOC105374778 Gene

Promoters and enhancers for LOC105374778 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I065054 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.2 -1231 5.1 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 CEP68 LOC105374778 RAB1A RNU6-548P ACTR2 LOC105374779
GH02I065055 Enhancer 0.2 Ensembl 550.8 +1.9 1896 0.2 LOC105374778 CEP68 LINC02576
GH02I065052 Enhancer 1 Ensembl ENCODE 0.8 +2.9 2883 1.6 SMAD1 BATF IRF4 SCRT2 ZNF143 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CEP68 RNU6-548P LOC105374778 LINC02576
GH02I065040 Enhancer 1.2 Ensembl ENCODE 0.4 +15.5 15463 0.7 HDGF MLX ZFP64 ARID4B ZNF2 IRF4 ZNF48 YY1 ARID2 ZNF143 RN7SL211P RNU6-548P CEP68 LINC02576 LOC105374778
GH02I065030 Enhancer 1.1 Ensembl ENCODE 0.3 +24.3 24336 2.4 HDGF ELF3 FOXA2 ARID4B FEZF1 ZNF2 ZSCAN9 RAD21 ZSCAN5C SCRT2 LINC02576 CEP68 SLC1A4 RN7SL211P RNU6-548P LOC105374778
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374778 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374778 Gene

Genomic Locations for LOC105374778 Gene
chr2:65,044,712-65,056,197
(GRCh38/hg38)
Size:
11,486 bases
Orientation:
Minus strand

Genomic View for LOC105374778 Gene

Genes around LOC105374778 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374778 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374778 Gene

Proteins for LOC105374778 Gene

Post-translational modifications for LOC105374778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374778 Gene

Domains & Families for LOC105374778 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374778 Gene

Function for LOC105374778 Gene

Phenotypes From GWAS Catalog for LOC105374778 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374778 Gene

Localization for LOC105374778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374778 Gene

Pathways & Interactions for LOC105374778 Gene

SuperPathways for LOC105374778 Gene

No Data Available

Interacting Proteins for LOC105374778 Gene

Gene Ontology (GO) - Biological Process for LOC105374778 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374778 Gene

Drugs & Compounds for LOC105374778 Gene

No Compound Related Data Available

Transcripts for LOC105374778 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374778 Gene

No ASD Table

Relevant External Links for LOC105374778 Gene

GeneLoc Exon Structure for
LOC105374778

No data available for mRNA/cDNA for LOC105374778 Gene

Expression for LOC105374778 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374778 Gene

Orthologs for LOC105374778 Gene

No data available for Orthologs and Evolution for LOC105374778 Gene

Paralogs for LOC105374778 Gene

No data available for Paralogs for LOC105374778 Gene

Variants for LOC105374778 Gene

Sequence variations from dbSNP and Humsavar for LOC105374778 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1057517664 pathogenic, Spastic tetraplegia, thin corpus callosum, and progressive microcephaly 65,016,583(-) TT/ genic_downstream_transcript_variant, intron_variant
rs201278558 pathogenic, Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, not provided 65,010,729(-) G/A genic_downstream_transcript_variant, intron_variant
rs761533681 pathogenic, likely-pathogenic, Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, not provided 65,020,916(-) C/T genic_downstream_transcript_variant, intron_variant
rs144265531 uncertain-significance, not provided 65,020,927(-) G/A genic_downstream_transcript_variant, intron_variant
rs149636167 uncertain-significance, not provided 64,989,683(-) G/A/T downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374778 Gene

Disorders for LOC105374778 Gene

No disorders were found for LOC105374778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374778 Gene

Publications for LOC105374778 Gene

No publications were found for LOC105374778 Gene.

Products for LOC105374778 Gene

Sources for LOC105374778 Gene

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