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Aliases for LOC105374724 Gene

Subcategory (RNA class) for LOC105374724 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374724 Gene

  • Uncharacterized LOC105374724 3
  • CTD-2113L7.1 3
  • AC137810.1 5

External Ids for LOC105374724 Gene

Previous GeneCards Identifiers for LOC105374724 Gene

  • GC05U902405

Summaries for LOC105374724 Gene

GeneCards Summary for LOC105374724 Gene

LOC105374724 (Uncharacterized LOC105374724) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105374724 include Severe Combined Immunodeficiency, Autosomal Recessive, T Cell-Negative, B Cell-Positive, Nk Cell-Positive.

Additional gene information for LOC105374724 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374724 Gene

Genomics for LOC105374724 Gene

GeneHancer (GH) Regulatory Elements for LOC105374724 Gene

Promoters and enhancers for LOC105374724 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J035824 Enhancer 0.5 dbSUPER 650.7 0.0 -38 4.5 SCRT1 IKZF1 SCRT2 IKZF2 LOC105374724 IL7R RNU7-130P CAPSL LOC100506406 SPEF2
GH05J035851 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.7 -29.1 -29073 8.6 PKNOX1 BATF IRF4 RAD21 RFX5 ATF7 FOS ETV6 IKZF2 RUNX3 IL7R LOC105374724 LOC100506406 CAPSL RNU7-130P LMBRD2 SPEF2 ENSG00000279737
GH05J036688 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -863.0 -862983 2.4 PKNOX1 SIN3A ZNF2 YY1 ZNF213 ZNF416 ZNF207 ZNF143 SP3 REST WDR70 NIPBL NUP155 ENSG00000250155 ENSG00000250455 LOC100506406 LOC105374724 SLC1A3 RANBP3L NADK2-AS1
GH05J035883 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -57.0 -57030 2.4 JUN EBF1 BATF HIC1 POLR2A EED FOS ETV6 IKZF2 RUNX3 IL7R LOC105374724 LMBRD2 ENSG00000279737
GH05J035777 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.1 +49.2 49217 0.4 ZFP64 RAD21 ZNF121 ZNF213 ZNF143 ZNF202 ZNF680 ZNF362 SP3 ZNF654 BRIX1 LOC105374724 CAPSL LOC100506406 SKP2 RNU7-130P SPEF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374724 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374724 Gene

Genomic Locations for LOC105374724 Gene
chr5:35,676,736-35,827,018
(GRCh38/hg38)
Size:
150,283 bases
Orientation:
Minus strand
chr5:35,678,586-35,827,120
(GRCh37/hg19)
Size:
148,535 bases
Orientation:
Minus strand

Genomic View for LOC105374724 Gene

Genes around LOC105374724 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374724 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374724 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374724 Gene

Proteins for LOC105374724 Gene

Post-translational modifications for LOC105374724 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374724 Gene

Domains & Families for LOC105374724 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374724 Gene

Function for LOC105374724 Gene

Phenotypes From GWAS Catalog for LOC105374724 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374724 Gene

Localization for LOC105374724 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374724 Gene

Pathways & Interactions for LOC105374724 Gene

SuperPathways for LOC105374724 Gene

No Data Available

Interacting Proteins for LOC105374724 Gene

Gene Ontology (GO) - Biological Process for LOC105374724 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374724 Gene

Drugs & Compounds for LOC105374724 Gene

No Compound Related Data Available

Transcripts for LOC105374724 Gene

mRNA/cDNA for LOC105374724 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374724 Gene

No ASD Table

Relevant External Links for LOC105374724 Gene

GeneLoc Exon Structure for
LOC105374724

Expression for LOC105374724 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374724 Gene

Orthologs for LOC105374724 Gene

Evolution for LOC105374724 Gene

ENSEMBL:
Gene Tree for LOC105374724 (if available)
TreeFam:
Gene Tree for LOC105374724 (if available)

No data available for Orthologs for LOC105374724 Gene

Paralogs for LOC105374724 Gene

No data available for Paralogs for LOC105374724 Gene

Variants for LOC105374724 Gene

Sequence variations from dbSNP and Humsavar for LOC105374724 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs11567704 benign, not specified, Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-positive, NK cell-positive 35,860,901(-) C/A/T upstream_transcript_variant
rs148001159 likely-pathogenic, uncertain-significance, Severe combined immunodeficiency disease, Severe Combined Immune Deficiency 35,860,983(-) G/C upstream_transcript_variant
rs149235072 likely-benign, benign, Severe Combined Immune Deficiency, Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-positive, NK cell-positive 35,860,922(-) G/A/T upstream_transcript_variant
rs1494558 pathogenic, benign, Severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-positive, NK cell-positive, not specified, Severe Combined Immune Deficiency 35,860,966(-) T/C upstream_transcript_variant
rs193922646 uncertain-significance, Severe combined immunodeficiency disease 35,860,834(-) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374724 Gene

Disorders for LOC105374724 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105374724 Gene - From: GeneCards

Disorder Aliases PubMed IDs
severe combined immunodeficiency, autosomal recessive, t cell-negative, b cell-positive, nk cell-positive
  • scid, autosomal recessive, t cell-negative, b cell-positive, nk cell-positive
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105374724: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374724 Gene

Publications for LOC105374724 Gene

No publications were found for LOC105374724 Gene.

Products for LOC105374724 Gene

Sources for LOC105374724 Gene

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