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Aliases for LOC105374653 Gene

Subcategory (RNA class) for LOC105374653 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374653 Gene

  • Uncharacterized LOC105374653 3

External Ids for LOC105374653 Gene

Previous GeneCards Identifiers for LOC105374653 Gene

  • GC02U903123

Summaries for LOC105374653 Gene

GeneCards Summary for LOC105374653 Gene

LOC105374653 (Uncharacterized LOC105374653) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374653 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374653 Gene

Genomics for LOC105374653 Gene

GeneHancer (GH) Regulatory Elements for LOC105374653 Gene

Promoters and enhancers for LOC105374653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I054671 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.9 -877 3.1 FOXA2 SMAD1 BMI1 BATF IRF4 YY1 ATF7 BCLAF1 IKZF2 RUNX3 LOC105374653 EML6 ACYP2 ENSG00000238018 GC02P054651
GH02I054664 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -6.6 -6647 6.4 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 ZNF143 EML6 ACYP2 PRORSD1P RPL23AP32 LOC105374653 ENSG00000238018 GC02P054651 SPTBN1
GH02I054676 Enhancer 0.4 dbSUPER 0.8 +2.6 2559 1.2 ZKSCAN8 MAFK EML6 ENSG00000238018 LOC105374653
GH02I054680 Enhancer 0.7 Ensembl 0.4 +6.5 6519 0.2 PKNOX1 EBF1 BMI1 FOSL1 POLR2A NFATC1 IKZF2 SMARCA5 ZNF687 CBFB ENSG00000238018 EML6 LOC105374667 ACYP2 GC02P054685 LOC105374653
GH02I054657 Enhancer 0.7 ENCODE dbSUPER 0.4 -15.8 -15779 1.6 CTCF ZNF143 SMC3 EBF1 REST RUNX3 RAD21 EML6 SPTBN1 GC02P054651 LOC105374653
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374653 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374653 Gene

Genomic Locations for LOC105374653 Gene
chr2:54,674,382-54,684,908
(GRCh38/hg38)
Size:
10,527 bases
Orientation:
Plus strand

Genomic View for LOC105374653 Gene

Genes around LOC105374653 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374653 Gene

Proteins for LOC105374653 Gene

Post-translational modifications for LOC105374653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374653 Gene

Domains & Families for LOC105374653 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374653 Gene

Function for LOC105374653 Gene

Phenotypes From GWAS Catalog for LOC105374653 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374653 Gene

Localization for LOC105374653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374653 Gene

Pathways & Interactions for LOC105374653 Gene

SuperPathways for LOC105374653 Gene

No Data Available

Interacting Proteins for LOC105374653 Gene

Gene Ontology (GO) - Biological Process for LOC105374653 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374653 Gene

Drugs & Compounds for LOC105374653 Gene

No Compound Related Data Available

Transcripts for LOC105374653 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374653 Gene

No ASD Table

Relevant External Links for LOC105374653 Gene

GeneLoc Exon Structure for
LOC105374653

No data available for mRNA/cDNA for LOC105374653 Gene

Expression for LOC105374653 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374653 Gene

Orthologs for LOC105374653 Gene

No data available for Orthologs and Evolution for LOC105374653 Gene

Paralogs for LOC105374653 Gene

No data available for Paralogs for LOC105374653 Gene

Variants for LOC105374653 Gene

Sequence variations from dbSNP and Humsavar for LOC105374653 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000211243 -- 54,674,719(+) G/A intron_variant
rs1000273253 -- 54,674,229(+) C/T upstream_transcript_variant
rs1000304324 -- 54,674,418(+) G/C non_coding_transcript_variant
rs1000346340 -- 54,679,867(+) G/A intron_variant
rs1000541768 -- 54,672,767(+) GGG/G/GGGGG upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374653 Gene

Disorders for LOC105374653 Gene

No disorders were found for LOC105374653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374653 Gene

Publications for LOC105374653 Gene

No publications were found for LOC105374653 Gene.

Products for LOC105374653 Gene

Sources for LOC105374653 Gene

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