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Aliases for LOC105374652 Gene

Subcategory (RNA class) for LOC105374652 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374652 Gene

  • Uncharacterized LOC105374652 3
  • CTD-2154B17.4 3
  • AC012629.2 5

External Ids for LOC105374652 Gene

Previous GeneCards Identifiers for LOC105374652 Gene

  • GC05U902359

Summaries for LOC105374652 Gene

GeneCards Summary for LOC105374652 Gene

LOC105374652 (Uncharacterized LOC105374652) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374652 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374652 Gene

Genomics for LOC105374652 Gene

GeneHancer (GH) Regulatory Elements for LOC105374652 Gene

Promoters and enhancers for LOC105374652 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J010759 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 656.4 +0.2 229 4.2 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 DAP LOC105374652 MARCH6 CMBL ROPN1L CTD-2154B17.1
GH05J010788 Enhancer 0.7 ENCODE 6.8 +28.4 28363 1.9 CEBPG FOSL1 TCF12 NCOR1 EGR1 CBFA2T2 NFE2 FOS SOX6 BHLHE40 LOC105374652 DAP CTD-2154B17.1 GC05M010841
GH05J010756 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -4.3 -4252 0.8 PKNOX1 EBF1 BMI1 BATF IRF4 POLR2A EGR1 BCLAF1 IKZF2 RXRA DAP LOC105374652 GC05M010752
GH05J010758 Enhancer 0.2 dbSUPER 0.7 -2.6 -2583 0.7 DAP GC05M010752 LOC105374652
GH05J010757 Enhancer 0.2 dbSUPER 0.7 -3.2 -3198 0.3 DAP LOC105374652 GC05M010752
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374652 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374652 Gene

Genomic Locations for LOC105374652 Gene
chr5:10,761,065-10,770,295
(GRCh38/hg38)
Size:
9,231 bases
Orientation:
Plus strand
chr5:10,761,177-10,770,406
(GRCh37/hg19)
Size:
9,230 bases
Orientation:
Plus strand

Genomic View for LOC105374652 Gene

Genes around LOC105374652 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374652 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374652 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374652 Gene

Proteins for LOC105374652 Gene

Post-translational modifications for LOC105374652 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374652 Gene

Domains & Families for LOC105374652 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374652 Gene

Function for LOC105374652 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374652 Gene

Localization for LOC105374652 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374652 Gene

Pathways & Interactions for LOC105374652 Gene

SuperPathways for LOC105374652 Gene

No Data Available

Interacting Proteins for LOC105374652 Gene

Gene Ontology (GO) - Biological Process for LOC105374652 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374652 Gene

Drugs & Compounds for LOC105374652 Gene

No Compound Related Data Available

Transcripts for LOC105374652 Gene

mRNA/cDNA for LOC105374652 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374652 Gene

No ASD Table

Relevant External Links for LOC105374652 Gene

GeneLoc Exon Structure for
LOC105374652

Expression for LOC105374652 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374652 Gene

Orthologs for LOC105374652 Gene

Evolution for LOC105374652 Gene

ENSEMBL:
Gene Tree for LOC105374652 (if available)
TreeFam:
Gene Tree for LOC105374652 (if available)

No data available for Orthologs for LOC105374652 Gene

Paralogs for LOC105374652 Gene

No data available for Paralogs for LOC105374652 Gene

Variants for LOC105374652 Gene

Sequence variations from dbSNP and Humsavar for LOC105374652 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000084962 -- 10,770,228(+) C/T non_coding_transcript_variant
rs1000323007 -- 10,765,844(+) C/G intron_variant, non_coding_transcript_variant
rs1000334118 -- 10,766,224(+) C/T intron_variant, non_coding_transcript_variant
rs1000517235 -- 10,760,125(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000873977 -- 10,762,178(+) G/A intron_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374652 Gene

Disorders for LOC105374652 Gene

No disorders were found for LOC105374652 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374652 Gene

Publications for LOC105374652 Gene

No publications were found for LOC105374652 Gene.

Products for LOC105374652 Gene

Sources for LOC105374652 Gene

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