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Aliases for LOC105374642 Gene

Subcategory (RNA class) for LOC105374642 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374642 Gene

  • Uncharacterized LOC105374642 3
  • AC122710.1 5

External Ids for LOC105374642 Gene

Previous GeneCards Identifiers for LOC105374642 Gene

  • GC05U902546

Summaries for LOC105374642 Gene

GeneCards Summary for LOC105374642 Gene

LOC105374642 (Uncharacterized LOC105374642) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374642 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374642 Gene

Genomics for LOC105374642 Gene

GeneHancer (GH) Regulatory Elements for LOC105374642 Gene

Promoters and enhancers for LOC105374642 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J006905 Enhancer 0.5 ENCODE 4.7 +37.6 37595 1.5 IKZF1 ATF7 CEBPG ATF2 EZH2 GC05P006905 LOC105374642 LINC02196 GC05M006834
GH05J006900 Enhancer 0.9 ENCODE 0.3 +32.5 32538 1 ELF3 FOXA2 ARID4B RAD21 YY1 ZNF614 CREM THAP11 MIXL1 NFKBIZ GC05P006905 LOC105374642 GC05M006834
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374642 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374642 Gene

Genomic Locations for LOC105374642 Gene
chr5:6,868,559-6,888,120
(GRCh38/hg38)
Size:
19,562 bases
Orientation:
Plus strand
chr5:6,868,672-6,886,900
(GRCh37/hg19)
Size:
18,229 bases
Orientation:
Plus strand

Genomic View for LOC105374642 Gene

Genes around LOC105374642 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374642 Gene

Proteins for LOC105374642 Gene

Post-translational modifications for LOC105374642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374642 Gene

Domains & Families for LOC105374642 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374642 Gene

Function for LOC105374642 Gene

Phenotypes From GWAS Catalog for LOC105374642 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374642 Gene

Localization for LOC105374642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374642 Gene

Pathways & Interactions for LOC105374642 Gene

SuperPathways for LOC105374642 Gene

No Data Available

Interacting Proteins for LOC105374642 Gene

Gene Ontology (GO) - Biological Process for LOC105374642 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374642 Gene

Drugs & Compounds for LOC105374642 Gene

No Compound Related Data Available

Transcripts for LOC105374642 Gene

mRNA/cDNA for LOC105374642 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374642 Gene

No ASD Table

Relevant External Links for LOC105374642 Gene

GeneLoc Exon Structure for
LOC105374642

Expression for LOC105374642 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374642 Gene

Orthologs for LOC105374642 Gene

Evolution for LOC105374642 Gene

ENSEMBL:
Gene Tree for LOC105374642 (if available)
TreeFam:
Gene Tree for LOC105374642 (if available)

No data available for Orthologs for LOC105374642 Gene

Paralogs for LOC105374642 Gene

No data available for Paralogs for LOC105374642 Gene

Variants for LOC105374642 Gene

Sequence variations from dbSNP and Humsavar for LOC105374642 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000028088 -- 6,883,779(+) A/G intron_variant
rs1000121121 -- 6,882,144(+) G/T intron_variant
rs1000273996 -- 6,876,156(+) AAAAGAAA/AAA intron_variant
rs1000298622 -- 6,859,898(+) C/T genic_upstream_transcript_variant, intron_variant
rs1000393821 -- 6,871,489(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374642 Gene

Disorders for LOC105374642 Gene

No disorders were found for LOC105374642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374642 Gene

Publications for LOC105374642 Gene

No publications were found for LOC105374642 Gene.

Products for LOC105374642 Gene

Sources for LOC105374642 Gene

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