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Aliases for LOC105374339 Gene

Subcategory (RNA class) for LOC105374339 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374339 Gene

  • Uncharacterized LOC105374339 3

External Ids for LOC105374339 Gene

Previous GeneCards Identifiers for LOC105374339 Gene

  • GC04U902404

Summaries for LOC105374339 Gene

GeneCards Summary for LOC105374339 Gene

LOC105374339 (Uncharacterized LOC105374339) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374339 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374339 Gene

Genomics for LOC105374339 Gene

GeneHancer (GH) Regulatory Elements for LOC105374339 Gene

Promoters and enhancers for LOC105374339 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J000785 Enhancer 0.8 ENCODE dbSUPER 650.7 -1.9 -1923 0.1 USF1 NANOG SUZ12 MAX BACH1 SIN3A REST POU5F1 EZH2 LOC105374339 PCGF3 LOC100129917 CPLX1
GH04J000786 Enhancer 0.5 dbSUPER 650.7 -0.4 -376 1.2 SCRT2 ZBTB33 RAD21 EZH2 NR2F2 LOC105374339 PCGF3 CPLX1 LOC100129917
GH04J000780 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -5.2 -5207 3.6 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 YY1 POLR2B FOS LOC100129917 SLC49A3 PCGF3 CRIPAK CPLX1 LOC105374339
GH04J000791 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 +5.0 4953 1.8 HDGF CTCF PKNOX1 EBF1 ZIC2 KLF5 ATF7 BCLAF1 IKZF2 RUNX3 PCGF3 CPLX1 LOC105374339
GH04J000825 Promoter 1.5 EPDnew Ensembl 0.3 +38.7 38660 0.4 SMARCE1 RB1 SAP130 KLF6 SUZ12 SIN3A ERF GATAD2B MNT REST CPLX1 PCGF3 UVSSA LOC105374339
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374339 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374339 Gene

Genomic Locations for LOC105374339 Gene
chr4:787,341-796,440
(GRCh38/hg38)
Size:
9,100 bases
Orientation:
Plus strand

Genomic View for LOC105374339 Gene

Genes around LOC105374339 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374339 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374339 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374339 Gene

Proteins for LOC105374339 Gene

Post-translational modifications for LOC105374339 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374339 Gene

Domains & Families for LOC105374339 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374339 Gene

Function for LOC105374339 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374339 Gene

Localization for LOC105374339 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374339 Gene

Pathways & Interactions for LOC105374339 Gene

SuperPathways for LOC105374339 Gene

No Data Available

Interacting Proteins for LOC105374339 Gene

Gene Ontology (GO) - Biological Process for LOC105374339 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374339 Gene

Drugs & Compounds for LOC105374339 Gene

No Compound Related Data Available

Transcripts for LOC105374339 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374339 Gene

No ASD Table

Relevant External Links for LOC105374339 Gene

GeneLoc Exon Structure for
LOC105374339

No data available for mRNA/cDNA for LOC105374339 Gene

Expression for LOC105374339 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374339 Gene

Orthologs for LOC105374339 Gene

No data available for Orthologs and Evolution for LOC105374339 Gene

Paralogs for LOC105374339 Gene

No data available for Paralogs for LOC105374339 Gene

Variants for LOC105374339 Gene

Sequence variations from dbSNP and Humsavar for LOC105374339 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1060499735 likely-pathogenic, Abnormality of brain morphology 786,584(+) C/A upstream_transcript_variant
rs1000123879 -- 792,719(+) C/T intron_variant
rs1000243664 -- 787,061(+) G/A non_coding_transcript_variant
rs1000321548 -- 795,163(+) G/A intron_variant
rs1000331103 -- 791,061(+) G/ intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374339 Gene

Disorders for LOC105374339 Gene

No disorders were found for LOC105374339 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374339 Gene

Publications for LOC105374339 Gene

No publications were found for LOC105374339 Gene.

Products for LOC105374339 Gene

Sources for LOC105374339 Gene

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