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Aliases for LOC105374260 Gene

Subcategory (RNA class) for LOC105374260 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374260 Gene

  • Uncharacterized LOC105374260 3

External Ids for LOC105374260 Gene

Previous GeneCards Identifiers for LOC105374260 Gene

  • GC03U902373

Summaries for LOC105374260 Gene

GeneCards Summary for LOC105374260 Gene

LOC105374260 (Uncharacterized LOC105374260) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374260 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374260 Gene

Genomics for LOC105374260 Gene

GeneHancer (GH) Regulatory Elements for LOC105374260 Gene

Promoters and enhancers for LOC105374260 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J187220 Enhancer 0.6 ENCODE 0.7 -4.6 -4608 0.2 CTCF ZNF654 TRIM22 REST RAD21 XRCC5 RBM39 SMC3 ZNF143 ZNF444 SNORA4 SNORA63B TBCCD1 MASP1 SNORA81 RTP4 LOC105374260 LOC101929106
GH03J187209 Enhancer 1 Ensembl ENCODE 0.4 -14.4 -14427 1.3 HDAC1 MEIS2 TEAD4 TAL1 ZNF644 FOSL1 CCNT2 TCF12 CTBP1 ZNF766 MASP1 RTP4 RTP1 LOC101929106 LOC105374260
GH03J187227 Enhancer 0.5 ENCODE 0.7 +3.1 3076 1.1 JUND JUN FOSL2 FOS HNF4A MASP1 LOC105374260 LOC101929130
GH03J187261 Enhancer 1.1 Ensembl ENCODE 0.3 +39.2 39150 4.3 ATF1 PKNOX1 FOXA2 ARID4B FEZF1 BRCA1 ETS1 YY1 SLC30A9 ATF7 MASP1 SST LOC101929130 LOC105374260
GH03J187285 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.2 +61.7 61714 1.7 FOXA2 ATF1 ETS1 YY1 TCF12 ZNF766 FOS ATF7 RXRA ZHX2 SNORA4 SNORA63B TBCCD1 SNORA81 MASP1 RFC4 SNORA63 LOC101929130 LOC105374260
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374260 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374260 Gene

Genomic Locations for LOC105374260 Gene
chr3:187,224,956-187,226,382
(GRCh38/hg38)
Size:
1,427 bases
Orientation:
Plus strand

Genomic View for LOC105374260 Gene

Genes around LOC105374260 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374260 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374260 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374260 Gene

Proteins for LOC105374260 Gene

Post-translational modifications for LOC105374260 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374260 Gene

Domains & Families for LOC105374260 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374260 Gene

Function for LOC105374260 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374260 Gene

Localization for LOC105374260 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374260 Gene

Pathways & Interactions for LOC105374260 Gene

SuperPathways for LOC105374260 Gene

No Data Available

Interacting Proteins for LOC105374260 Gene

Gene Ontology (GO) - Biological Process for LOC105374260 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374260 Gene

Drugs & Compounds for LOC105374260 Gene

No Compound Related Data Available

Transcripts for LOC105374260 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374260 Gene

No ASD Table

Relevant External Links for LOC105374260 Gene

GeneLoc Exon Structure for
LOC105374260

No data available for mRNA/cDNA for LOC105374260 Gene

Expression for LOC105374260 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374260 Gene

Orthologs for LOC105374260 Gene

No data available for Orthologs and Evolution for LOC105374260 Gene

Paralogs for LOC105374260 Gene

No data available for Paralogs for LOC105374260 Gene

Variants for LOC105374260 Gene

Sequence variations from dbSNP and Humsavar for LOC105374260 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000147994 -- 187,221,668(+) C/G upstream_transcript_variant
rs1000434805 -- 187,221,922(+) T/C upstream_transcript_variant
rs1001088487 -- 187,226,421(+) A/G downstream_transcript_variant
rs1001334699 -- 187,226,393(+) C/T non_coding_transcript_variant
rs1001491366 -- 187,226,212(+) A/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374260 Gene

Disorders for LOC105374260 Gene

No disorders were found for LOC105374260 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374260 Gene

Publications for LOC105374260 Gene

No publications were found for LOC105374260 Gene.

Products for LOC105374260 Gene

Sources for LOC105374260 Gene

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