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Aliases for LOC105374258 Gene

Subcategory (RNA class) for LOC105374258 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374258 Gene

  • Uncharacterized LOC105374258 3
  • AC068631.1 5

External Ids for LOC105374258 Gene

Previous GeneCards Identifiers for LOC105374258 Gene

  • GC03U902816

Summaries for LOC105374258 Gene

GeneCards Summary for LOC105374258 Gene

LOC105374258 (Uncharacterized LOC105374258) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374258 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374258 Gene

Genomics for LOC105374258 Gene

GeneHancer (GH) Regulatory Elements for LOC105374258 Gene

Promoters and enhancers for LOC105374258 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J186772 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +0.1 73 1.5 NCOA3 CLOCK MAX SIN3A EBF1 ZNF507 YY1 E2F1 CTBP1 GATA3 GPS2P2 RNU6-1105P LOC105374258 GC03M186772 TBCCD1 EIF4A2 ST6GAL1
GH03J186752 Enhancer 1.1 Ensembl ENCODE 0.4 +18.8 18848 3.9 FOXA2 ARID4B BRCA1 YY1 TCF12 ZNF121 ZNF143 ATF7 FOS REST LOC105374259 KNG1 EIF4A2 SNORA81 SNORA63B SNORA63 RFC4 FETUB ENSG00000231724 AHSG
GH03J186742 Enhancer 1.1 Ensembl ENCODE 0.3 +28.2 28161 4.4 FOXA2 ARID4B DMAP1 ZNF48 YY1 ETS1 SLC30A9 NFKBIZ RXRA SP5 LOC105374259 KNG1 LOC105374258
GH03J186776 Enhancer 0.4 ENCODE 0.7 -3.3 -3341 0.4 NANOG HLF LOC105374258 GC03P186781
GH03J186760 Enhancer 0.7 ENCODE 0.4 +12.1 12063 1.7 NCOA3 PKNOX1 ESRRA FOXA2 NEUROD1 RFX5 RARA FOSL1 CTBP1 GATA3 PSMD10P2 KNG1 EIF4A2 SNORA81 SNORA63B SNORA63 RFC4 ENSG00000231724 HRG GPS2P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374258 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374258 Gene

Genomic Locations for LOC105374258 Gene
chr3:186,579,476-186,772,986
(GRCh38/hg38)
Size:
193,511 bases
Orientation:
Minus strand
chr3:186,435,038-186,478,330
(GRCh37/hg19)
Size:
43,293 bases
Orientation:
Minus strand

Genomic View for LOC105374258 Gene

Genes around LOC105374258 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374258 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374258 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374258 Gene

Proteins for LOC105374258 Gene

Post-translational modifications for LOC105374258 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374258 Gene

Domains & Families for LOC105374258 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374258 Gene

Function for LOC105374258 Gene

Phenotypes From GWAS Catalog for LOC105374258 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374258 Gene

Localization for LOC105374258 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374258 Gene

Pathways & Interactions for LOC105374258 Gene

SuperPathways for LOC105374258 Gene

No Data Available

Interacting Proteins for LOC105374258 Gene

Gene Ontology (GO) - Biological Process for LOC105374258 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374258 Gene

Drugs & Compounds for LOC105374258 Gene

No Compound Related Data Available

Transcripts for LOC105374258 Gene

mRNA/cDNA for LOC105374258 Gene

(55) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(55) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374258 Gene

No ASD Table

Relevant External Links for LOC105374258 Gene

GeneLoc Exon Structure for
LOC105374258

Expression for LOC105374258 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374258 Gene

Orthologs for LOC105374258 Gene

Evolution for LOC105374258 Gene

ENSEMBL:
Gene Tree for LOC105374258 (if available)
TreeFam:
Gene Tree for LOC105374258 (if available)

No data available for Orthologs for LOC105374258 Gene

Paralogs for LOC105374258 Gene

No data available for Paralogs for LOC105374258 Gene

Variants for LOC105374258 Gene

Sequence variations from dbSNP and Humsavar for LOC105374258 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs121918122 pathogenic, Thrombophilia, histidine-rich glycoprotein-related 186,669,945(-) G/A genic_upstream_transcript_variant, intron_variant
rs761776963 likely-pathogenic, Familial early-onset deep venous thrombosis 186,669,022(-) C/T genic_upstream_transcript_variant, intron_variant
rs563237107 uncertain-significance, not specified 186,666,128(-) AAA/AA genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000002985 -- 186,699,714(-) T/C genic_upstream_transcript_variant, intron_variant
rs1000021136 -- 186,662,008(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374258 Gene

Disorders for LOC105374258 Gene

No disorders were found for LOC105374258 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374258 Gene

Publications for LOC105374258 Gene

No publications were found for LOC105374258 Gene.

Products for LOC105374258 Gene

Sources for LOC105374258 Gene

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