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Aliases for LOC105374254 Gene

Subcategory (RNA class) for LOC105374254 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374254 Gene

  • Uncharacterized LOC105374254 3

External Ids for LOC105374254 Gene

Previous GeneCards Identifiers for LOC105374254 Gene

  • GC03U902490

Summaries for LOC105374254 Gene

GeneCards Summary for LOC105374254 Gene

LOC105374254 (Uncharacterized LOC105374254) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374254 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374254 Gene

Genomics for LOC105374254 Gene

GeneHancer (GH) Regulatory Elements for LOC105374254 Gene

Promoters and enhancers for LOC105374254 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J185496 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -1.2 -1175 3.7 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 TMEM41A LOC105374254 GC03P185502 TRA2B MAP3K13 LOC101929018
GH03J185502 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 +4.3 4258 1.9 NFIA ZFP64 ZNF781 ZNF518A ZNF697 ZNF148 MEF2D NFIC GABPB1 PRDM12 MAGEF1 C3orf70 LOC105374254 LIPH
GH03J185536 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.3 +38.5 38549 1.9 SMAD1 SIN3A ZNF2 IRF4 ZNF766 CBX5 ZNF213 FOS DEK SP3 SENP2 TMEM41A LIPH LOC105374254
GH03J185511 Enhancer 0.6 ENCODE dbSUPER 0.4 +12.7 12725 1.2 SP1 RXRA HNF4A LIPH LOC105374254
GH03J185548 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +50.8 50765 2.7 NFIB RFX5 EGR1 SCRT2 RCOR1 FOS ZNF280D USF2 CEBPB ZNF217 LIPH LOC105374254
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374254 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374254 Gene

Genomic Locations for LOC105374254 Gene
chr3:185,499,140-185,504,493
(GRCh38/hg38)
Size:
5,354 bases
Orientation:
Plus strand

Genomic View for LOC105374254 Gene

Genes around LOC105374254 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374254 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374254 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374254 Gene

Proteins for LOC105374254 Gene

Post-translational modifications for LOC105374254 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374254 Gene

Domains & Families for LOC105374254 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374254 Gene

Function for LOC105374254 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374254 Gene

Localization for LOC105374254 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374254 Gene

Pathways & Interactions for LOC105374254 Gene

SuperPathways for LOC105374254 Gene

No Data Available

Interacting Proteins for LOC105374254 Gene

Gene Ontology (GO) - Biological Process for LOC105374254 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374254 Gene

Drugs & Compounds for LOC105374254 Gene

No Compound Related Data Available

Transcripts for LOC105374254 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374254 Gene

No ASD Table

Relevant External Links for LOC105374254 Gene

GeneLoc Exon Structure for
LOC105374254

No data available for mRNA/cDNA for LOC105374254 Gene

Expression for LOC105374254 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374254 Gene

Orthologs for LOC105374254 Gene

No data available for Orthologs and Evolution for LOC105374254 Gene

Paralogs for LOC105374254 Gene

No data available for Paralogs for LOC105374254 Gene

Variants for LOC105374254 Gene

Sequence variations from dbSNP and Humsavar for LOC105374254 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000213414 -- 185,500,516(+) T/C intron_variant
rs1001064594 -- 185,502,685(+) A/G intron_variant
rs1001433619 -- 185,503,083(+) G/A intron_variant
rs1001642698 -- 185,499,648(+) A/G non_coding_transcript_variant
rs1001883350 -- 185,502,148(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374254 Gene

Disorders for LOC105374254 Gene

No disorders were found for LOC105374254 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374254 Gene

Publications for LOC105374254 Gene

No publications were found for LOC105374254 Gene.

Products for LOC105374254 Gene

Sources for LOC105374254 Gene

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