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Aliases for LOC105374249 Gene

Subcategory (RNA class) for LOC105374249 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374249 Gene

  • Uncharacterized LOC105374249 3

External Ids for LOC105374249 Gene

Previous GeneCards Identifiers for LOC105374249 Gene

  • GC03U902753

Summaries for LOC105374249 Gene

GeneCards Summary for LOC105374249 Gene

LOC105374249 (Uncharacterized LOC105374249) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105374249 include Leukoencephalopathy With Vanishing White Matter.

Additional gene information for LOC105374249 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374249 Gene

Genomics for LOC105374249 Gene

GeneHancer (GH) Regulatory Elements for LOC105374249 Gene

Promoters and enhancers for LOC105374249 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J184133 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.4 -439 3.1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ZNF610 GLIS1 EIF2B5 ENSG00000273181 LOC105374249 ENSG00000272721 DVL3 VWA5B2 RPS3P3 POLR2H AP2M1 ABCC5-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374249 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374249 Gene

Genomic Locations for LOC105374249 Gene
chr3:184,132,942-184,134,799
(GRCh38/hg38)
Size:
1,858 bases
Orientation:
Minus strand

Genomic View for LOC105374249 Gene

Genes around LOC105374249 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374249 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374249 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374249 Gene

Proteins for LOC105374249 Gene

Post-translational modifications for LOC105374249 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374249 Gene

Domains & Families for LOC105374249 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374249 Gene

Function for LOC105374249 Gene

Phenotypes From GWAS Catalog for LOC105374249 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374249 Gene

Localization for LOC105374249 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374249 Gene

Pathways & Interactions for LOC105374249 Gene

SuperPathways for LOC105374249 Gene

No Data Available

Interacting Proteins for LOC105374249 Gene

Gene Ontology (GO) - Biological Process for LOC105374249 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374249 Gene

Drugs & Compounds for LOC105374249 Gene

No Compound Related Data Available

Transcripts for LOC105374249 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374249 Gene

No ASD Table

Relevant External Links for LOC105374249 Gene

GeneLoc Exon Structure for
LOC105374249

No data available for mRNA/cDNA for LOC105374249 Gene

Expression for LOC105374249 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374249 Gene

Orthologs for LOC105374249 Gene

No data available for Orthologs and Evolution for LOC105374249 Gene

Paralogs for LOC105374249 Gene

No data available for Paralogs for LOC105374249 Gene

Variants for LOC105374249 Gene

Sequence variations from dbSNP and Humsavar for LOC105374249 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs113994043 pathogenic, Leukoencephalopathy with vanishing white matter 184,135,551(-) T/G upstream_transcript_variant
rs121908541 pathogenic, Leukoencephalopathy with vanishing white matter 184,135,552(-) T/G upstream_transcript_variant
rs146922950 uncertain-significance, Leukoencephalopathy with vanishing white matter 184,135,283(-) C/G upstream_transcript_variant
rs182550783 uncertain-significance, Leukoencephalopathy with vanishing white matter 184,135,269(-) C/A/T upstream_transcript_variant
rs187117854 uncertain-significance, Leukoencephalopathy with vanishing white matter 184,135,233(-) T/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374249 Gene

Disorders for LOC105374249 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105374249 Gene - From: GeneCards

Disorder Aliases PubMed IDs
leukoencephalopathy with vanishing white matter
  • cle
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105374249: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374249 Gene

Publications for LOC105374249 Gene

No publications were found for LOC105374249 Gene.

Products for LOC105374249 Gene

Sources for LOC105374249 Gene

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