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Aliases for LOC105373953 Gene

Subcategory (RNA class) for LOC105373953 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105373953 Gene

  • Uncharacterized LOC105373953 3

External Ids for LOC105373953 Gene

Previous GeneCards Identifiers for LOC105373953 Gene

  • GC02U903101

Summaries for LOC105373953 Gene

GeneCards Summary for LOC105373953 Gene

LOC105373953 (Uncharacterized LOC105373953) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105373953 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105373953 Gene

Genomics for LOC105373953 Gene

GeneHancer (GH) Regulatory Elements for LOC105373953 Gene

Promoters and enhancers for LOC105373953 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J237205 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.0 -4037 10.2 IKZF1 HDGF CREB1 PKNOX1 YBX1 ZIC2 TARDBP ATF7 CTBP1 ZNF239 MLPH ENSG00000227252 ILKAP COL6A3 LOC105373953 LOC105373952
GH02J237217 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.8 7838 7.9 POLR2A MNT SP1 FOS FOSL2 ZNF18 JUND GLIS1 COL6A3 LOC105373953 ENSG00000224132
GH02J237195 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -14.2 -14198 8.1 SP1 ZNF652 ZNF148 MLLT1 ZNF687 MAFK EGR1 ZNF680 SMARCA4 IKZF1 COL6A3 ENSG00000222022 MLPH COPS8 LOC105373953 LOC105373952
GH02J237226 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.0 14042 2.8 SP1 FOS FOSL2 JUND JUN ENSG00000224132 COL6A3 LOC105373953
GH02J237177 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -31.8 -31809 9.3 ZKSCAN8 REST CTBP1 JUN SP1 ATF3 JUND RAD51 FOXA2 FOS ENSG00000224132 COL6A3 ENSG00000222022 COPS8 LOC105373953 LOC105373952
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105373953 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105373953 Gene

Genomic Locations for LOC105373953 Gene
chr2:237,213,738-237,257,644
(GRCh38/hg38)
Size:
43,907 bases
Orientation:
Plus strand

Genomic View for LOC105373953 Gene

Genes around LOC105373953 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373953 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373953 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373953 Gene

Proteins for LOC105373953 Gene

Post-translational modifications for LOC105373953 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373953 Gene

Domains & Families for LOC105373953 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105373953 Gene

Function for LOC105373953 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373953 Gene

Localization for LOC105373953 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373953 Gene

Pathways & Interactions for LOC105373953 Gene

PathCards logo

SuperPathways for LOC105373953 Gene

No Data Available

Interacting Proteins for LOC105373953 Gene

Gene Ontology (GO) - Biological Process for LOC105373953 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373953 Gene

Drugs & Compounds for LOC105373953 Gene

No Compound Related Data Available

Transcripts for LOC105373953 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373953 Gene

No ASD Table

Relevant External Links for LOC105373953 Gene

GeneLoc Exon Structure for
LOC105373953

No data available for mRNA/cDNA for LOC105373953 Gene

Expression for LOC105373953 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373953 Gene

Orthologs for LOC105373953 Gene

No data available for Orthologs and Evolution for LOC105373953 Gene

Paralogs for LOC105373953 Gene

No data available for Paralogs for LOC105373953 Gene

Variants for LOC105373953 Gene

Sequence variations from dbSNP and Humsavar for LOC105373953 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000071040 -- 237,219,766(+) T/A intron_variant
rs1000283087 -- 237,254,716(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000314881 -- 237,213,641(+) C/G/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1000340417 -- 237,241,354(+) G/A genic_downstream_transcript_variant, intron_variant
rs1000370532 -- 237,258,549(+) A/G genic_downstream_transcript_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105373953 Gene

Disorders for LOC105373953 Gene

No disorders were found for LOC105373953 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373953 Gene

Publications for LOC105373953 Gene

No publications were found for LOC105373953 Gene.

No data available for External Links for LOC105373953 Gene

Products for LOC105373953 Gene

Sources for LOC105373953 Gene

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