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Aliases for LOC105373885 Gene

Subcategory (RNA class) for LOC105373885 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105373885 Gene

  • Uncharacterized LOC105373885 3

External Ids for LOC105373885 Gene

Previous GeneCards Identifiers for LOC105373885 Gene

  • GC02U903793

Summaries for LOC105373885 Gene

GeneCards Summary for LOC105373885 Gene

LOC105373885 (Uncharacterized LOC105373885) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105373885 include Myopathy, Centronuclear, 5.

Additional gene information for LOC105373885 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105373885 Gene

Genomics for LOC105373885 Gene

GeneHancer (GH) Regulatory Elements for LOC105373885 Gene

Promoters and enhancers for LOC105373885 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J219517 Promoter 0.8 Ensembl 600.7 -0.6 -554 0.8 IKZF1 ZNF316 ZKSCAN1 TRIM28 LOC105373885 ENSG00000227432 ASIC4 TMEM198
GH02J219520 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -5.0 -4972 3.5 ZFX CC2D1A CTCF CBFA2T2 ZNF148 MAFK TRIM24 ZNF639 EGR1 SMARCA4 ASIC4 CNOT9 NHEJ1 USP37 SLC23A3 BCS1L ANKZF1 TMEM198 ENSG00000269068 ENSG00000272644
GH02J219514 Promoter/Enhancer 1.4 EPDnew ENCODE 0.7 +2.6 2605 0.2 CC2D1A CBFA2T2 ZNF148 MLLT1 GTF2F1 TRIM24 ZNF639 EGR1 SMARCA4 MTA1 ASIC4 ZFAND2B ANKZF1 ENSG00000227432 LOC105373885
GH02J219495 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +17.8 17797 7.5 ZFX SP1 ELF3 CTCF MNT SIX5 CBFA2T2 ZNF148 NKRF POLR2A ENSG00000268603 GMPPA GC02M219493 ZNF142 STK36 RNF25 CNOT9 USP37 NHEJ1 STK11IP
GH02J219515 Promoter 1.2 Ensembl 0.7 +2.3 2346 0.2 CC2D1A CBFA2T2 ZNF148 GTF2F1 ZNF639 SMARCA4 DPF2 ZNF600 ATF1 REST ASIC4 ENSG00000227432 LOC105373885
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105373885 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105373885 Gene

Genomic Locations for LOC105373885 Gene
chr2:219,481,732-219,517,047
(GRCh38/hg38)
Size:
35,316 bases
Orientation:
Minus strand

Genomic View for LOC105373885 Gene

Genes around LOC105373885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373885 Gene

Proteins for LOC105373885 Gene

Post-translational modifications for LOC105373885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373885 Gene

Domains & Families for LOC105373885 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105373885 Gene

Function for LOC105373885 Gene

Phenotypes From GWAS Catalog for LOC105373885 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373885 Gene

Localization for LOC105373885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373885 Gene

Pathways & Interactions for LOC105373885 Gene

PathCards logo

SuperPathways for LOC105373885 Gene

No Data Available

Interacting Proteins for LOC105373885 Gene

Gene Ontology (GO) - Biological Process for LOC105373885 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373885 Gene

Drugs & Compounds for LOC105373885 Gene

No Compound Related Data Available

Transcripts for LOC105373885 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373885 Gene

No ASD Table

Relevant External Links for LOC105373885 Gene

GeneLoc Exon Structure for
LOC105373885

No data available for mRNA/cDNA for LOC105373885 Gene

Expression for LOC105373885 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373885 Gene

Orthologs for LOC105373885 Gene

No data available for Orthologs and Evolution for LOC105373885 Gene

Paralogs for LOC105373885 Gene

No data available for Paralogs for LOC105373885 Gene

Variants for LOC105373885 Gene

Sequence variations from dbSNP and Humsavar for LOC105373885 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1553624347 pathogenic, Alacrima, achalasia, and mental retardation syndrome 219,505,556(-) G/A intron_variant
rs397518460 pathogenic, Alacrima, achalasia, and mental retardation syndrome 219,501,903(-) C/G/T intron_variant
rs397518461 pathogenic, Alacrima, achalasia, and mental retardation syndrome 219,506,260(-) A/C intron_variant
rs397518462 pathogenic, Alacrima, achalasia, and mental retardation syndrome 219,504,138(-) G/A/C intron_variant
rs587777672 pathogenic, Myopathy, centronuclear, 5 219,484,160(-) C/A/G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105373885 Gene

Disorders for LOC105373885 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105373885 Gene - From: GeneCards

Disorder Aliases PubMed IDs
myopathy, centronuclear, 5
  • cnm5
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105373885: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373885 Gene

Publications for LOC105373885 Gene

No publications were found for LOC105373885 Gene.

No data available for External Links for LOC105373885 Gene

Products for LOC105373885 Gene

Sources for LOC105373885 Gene

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