Aliases for LOC105373878 Gene

Subcategory (RNA class) for LOC105373878 Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for LOC105373878 Gene

  • Uncharacterized LOC105373878 3
  • HSALNG0022218 169
  • NONHSAG030509 94
  • Lnc-RUFY4-1 170

External Ids for LOC105373878 Gene

Previous GeneCards Identifiers for LOC105373878 Gene

  • GC02U903687

Summaries for LOC105373878 Gene

GeneCards Summary for LOC105373878 Gene

LOC105373878 (Uncharacterized LOC105373878) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105373878 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105373878 Gene

Genomics for LOC105373878 Gene

GeneHancer (GH) Regulatory Elements for LOC105373878 Gene

Promoters and enhancers for LOC105373878 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J217976 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.6 -604 7.1 PATZ1 ZNF692 ZNF512B EZH2 ZNF207 NONO ZFP69B ZNF623 NFIB ZFHX2 ENSG00000223923 LOC105373878 AAMP STK36 BCS1L CNOT9 USP37 TNS1 lnc-RUFY4-4
GH02J217992 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +16.6 16561 5.5 CTCF RAD21 PRDM1 CREB1 PRDM10 CEBPB ATF7 JUN JUND SP1 RUFY4 lnc-CXCR1-1 ENSG00000223923 LOC105373878 TNS1
GH02J217987 Enhancer 1 ENCODE dbSUPER 0.4 +10.2 10232 2.8 CTCF RBPJ ZNF217 HLF RAD21 ZNF652 SP1 NCOA3 CEBPG KLF14 TNS1 AAMP CNOT9 RNF25 RUFY4 STK36 BCS1L USP37 lnc-CXCR1-1 ENSG00000223923
GH02J217982 Enhancer 0.6 Ensembl dbSUPER 0.6 +4.7 4737 1.8 PKNOX1 ZNF10 NR2F2 TNS1 RUFY4 ENSG00000223923 LOC105373878 lnc-CXCR1-1
GH02J217986 Enhancer 0.2 Ensembl 0.4 +7.6 7638 0.4 TNS1 RUFY4 lnc-CXCR1-1 ENSG00000223923 LOC105373878
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105373878 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105373878 Gene

Genomic Locations for LOC105373878 Gene
chr2:217,978,763-217,993,768
(GRCh38/hg38)
Size:
15,006 bases
Orientation:
Plus strand

Genomic View for LOC105373878 Gene

Genes around LOC105373878 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373878 Gene

Proteins for LOC105373878 Gene

Post-translational modifications for LOC105373878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373878 Gene

Domains & Families for LOC105373878 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105373878 Gene

Function for LOC105373878 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373878 Gene

Localization for LOC105373878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373878 Gene

Pathways & Interactions for LOC105373878 Gene

PathCards logo

SuperPathways for LOC105373878 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105373878 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373878 Gene

Drugs & Compounds for LOC105373878 Gene

No Compound Related Data Available

Transcripts for LOC105373878 Gene

mRNA/cDNA for LOC105373878 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNACentral transcripts :
(4) NONCODE transcripts :
(3) LncBook transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373878 Gene

No ASD Table

Relevant External Links for LOC105373878 Gene

GeneLoc Exon Structure for
LOC105373878

Expression for LOC105373878 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373878 Gene

Orthologs for LOC105373878 Gene

No data available for Orthologs and Evolution for LOC105373878 Gene

Paralogs for LOC105373878 Gene

No data available for Paralogs for LOC105373878 Gene

Variants for LOC105373878 Gene

Sequence variations from dbSNP and Humsavar for LOC105373878 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000323651 -- 217,987,419(+) C/T intron_variant
rs1000371410 -- 217,981,702(+) C/G/T intron_variant
rs1000652294 -- 217,977,624(+) A/T upstream_transcript_variant
rs1000696338 -- 217,983,072(+) T/C intron_variant
rs1000727854 -- 217,977,136(+) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105373878 Gene

Disorders for LOC105373878 Gene

No disorders were found for LOC105373878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373878 Gene

Publications for LOC105373878 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LOC105373878 Gene

Products for LOC105373878 Gene

Sources for LOC105373878 Gene