Aliases for LOC105373514 Gene

Data sources for LOC105373514 Gene:

Subcategory (RNA class) for LOC105373514 Gene

lncRNA

Aliases for LOC105373514 Gene

External Ids for LOC105373514 Gene

Previous GeneCards Identifiers for LOC105373514 Gene

  • GC02U903249

Summaries for LOC105373514 Gene

GeneCards Summary for LOC105373514 Gene

LOC105373514 (Uncharacterized LOC105373514) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105373514 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105373514 Gene

Genomics for LOC105373514 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105373514 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J101566 Enhancer 1 Ensembl 250.7 +0.6 623 2.6 CHD2 MXD4 CEBPA FOXA1 ZFP64 HOMEZ KDM6A THAP11 CUX1 ZNF511 LOC105373514 HSALNG0017380 ENSG00000286047 RFX8 MAP4K4
GH02J101570 Enhancer 0.7 Ensembl ENCODE 0.7 -2.4 -2377 1.8 THAP11 ZSCAN9 CREM SPI1 CEBPB KLF16 RCOR2 CEBPG ENSG00000234389 LOC105373514 piR-32285-054 ENSG00000286047 RFX8 MAP4K4
GH02J101558 Enhancer 0.8 Ensembl ENCODE 0.4 +7.2 7224 5 CEBPA FOXA2 SMAD4 PRDM1 RARA BCL6 TCF7L2 FOXP1 SPI1 SOX5 RFX8 LOC105373514 HSALNG0017380 ENSG00000286047 MAP4K4
GH02J101557 Enhancer 0.8 FANTOM5 0.4 +10.7 10742 0.3 CEBPA THAP11 FOXA2 SMAD4 SAP130 GABPA ZSCAN9 ETV4 GABPB1 RARA LOC105373514 HSALNG0017380 ENSG00000286047 RFX8 MAP4K4
GH02J101556 Enhancer 0.7 Ensembl 0.4 +11.8 11823 0.2 THAP11 ETV4 TEAD3 THRB BCL6 CREM KDM1A FOXP1 MBD1 SOX5 RFX8 LOC105373514 HSALNG0017380 ENSG00000286047 MAP4K4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105373514 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105373514 Gene

Latest Assembly
chr2:101,551,529-101,567,924
(GRCh38/hg38)
Size:
16,396 bases
Orientation:
Minus strand

Genomic View for LOC105373514 Gene

Genes around LOC105373514 on UCSC Golden Path with GeneCards custom track
LOC105373514 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105373514 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373514 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373514 Gene

Proteins for LOC105373514 Gene

Post-translational modifications for LOC105373514 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373514 Gene

Domains & Families for LOC105373514 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105373514 Gene

Function for LOC105373514 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373514 Gene

Localization for LOC105373514 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373514 Gene

Pathways & Interactions for LOC105373514 Gene

PathCards logo

SuperPathways for LOC105373514 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105373514 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105373514 Gene

Drugs & Compounds for LOC105373514 Gene

No Compound Related Data Available

Transcripts for LOC105373514 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105373514 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000E8BA9F_9606 lncRNA 700 1

Ensembl: ENST00000651956 (view in UCSC) ,

URS00009AF01E_9606 lncRNA 709 2

LncBook: HSALNT0036586,

NONCODE: NONHSAT185208.1,

URS00008C3940_9606 lncRNA 696 2

LNCipedia: lnc-RFX8-1:1,

NONCODE: NONHSAT072830.2,

URS00009AF357_9606 lncRNA 467 2

LncBook: HSALNT0036588,

NONCODE: NONHSAT185209.1,

URS0001BE2F2C_9606 lncRNA 950 1

LncBook: HSALNT0036583,

LOC105373514 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373514 Gene

No ASD Table

Relevant External Links for LOC105373514 Gene

GeneLoc Exon Structure for
LOC105373514

No data available for mRNA/cDNA for LOC105373514 Gene

Expression for LOC105373514 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105373514

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373514 Gene

Orthologs for LOC105373514 Gene

Evolution for LOC105373514 Gene

ENSEMBL:
Gene Tree for LOC105373514 (if available)
TreeFam:
Gene Tree for LOC105373514 (if available)

No data available for Orthologs for LOC105373514 Gene

Paralogs for LOC105373514 Gene

No data available for Paralogs for LOC105373514 Gene

Variants for LOC105373514 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105373514 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105373514 Gene

Disorders for LOC105373514 Gene

No disorders were found for LOC105373514 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373514 Gene

Publications for LOC105373514 Gene

No publications were found for LOC105373514 Gene.

No data available for Mastermind for LOC105373514 Gene

Products for LOC105373514 Gene

Sources for LOC105373514 Gene