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Aliases for LOC105373386 Gene

Subcategory (RNA class) for LOC105373386 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105373386 Gene

  • Uncharacterized LOC105373386 3
  • XX-FW83128A1.2 3
  • AC245140.1 5

External Ids for LOC105373386 Gene

Previous GeneCards Identifiers for LOC105373386 Gene

  • GC0XU902153

Summaries for LOC105373386 Gene

GeneCards Summary for LOC105373386 Gene

LOC105373386 (Uncharacterized LOC105373386) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105373386 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105373386 Gene

Genomics for LOC105373386 Gene

GeneHancer (GH) Regulatory Elements for LOC105373386 Gene

Promoters and enhancers for LOC105373386 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI154340 Enhancer 0.9 Ensembl ENCODE dbSUPER 550.8 -0.2 -158 4.6 ZNF335 ZFP69B PKNOX1 ZNF692 SP2 KLF8 GC0XP154343 GC0XP154344 LOC105373386 PIR36226 GC0XM154351 GC0XM154352
GH0XI154346 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -6.7 -6744 6.6 BCOR GTF2F1 ESRRA KLF1 NFIB EBF1 HIC1 POLR2B POLR2A PRDM10 GC0XM154351 GC0XM154352 PLXNA3 FAM50A FAM3A LOC105373386 FLNA
GH0XI154333 Enhancer 0.8 Ensembl ENCODE 0.4 +8.6 8555 1.8 SMARCA5 PKNOX1 ZMYM3 DPF2 ATF2 IRF4 ZNF664 TARDBP IKZF1 IKZF2 FAM3A LOC105373386 PIR36226 GC0XP154344 GC0XP154343 TEX28
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105373386 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105373386 Gene

Genomic Locations for LOC105373386 Gene
chrX:154,333,960-154,342,742
(GRCh38/hg38)
Size:
8,783 bases
Orientation:
Minus strand
chrX:153,562,310-153,563,387
(GRCh37/hg19)

Genomic View for LOC105373386 Gene

Genes around LOC105373386 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105373386 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373386 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373386 Gene

Proteins for LOC105373386 Gene

Post-translational modifications for LOC105373386 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373386 Gene

Domains & Families for LOC105373386 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105373386 Gene

Function for LOC105373386 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373386 Gene

Localization for LOC105373386 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373386 Gene

Pathways & Interactions for LOC105373386 Gene

SuperPathways for LOC105373386 Gene

No Data Available

Interacting Proteins for LOC105373386 Gene

Gene Ontology (GO) - Biological Process for LOC105373386 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105373386 Gene

Drugs & Compounds for LOC105373386 Gene

No Compound Related Data Available

Transcripts for LOC105373386 Gene

mRNA/cDNA for LOC105373386 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373386 Gene

No ASD Table

Relevant External Links for LOC105373386 Gene

GeneLoc Exon Structure for
LOC105373386

Expression for LOC105373386 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373386 Gene

Orthologs for LOC105373386 Gene

Evolution for LOC105373386 Gene

ENSEMBL:
Gene Tree for LOC105373386 (if available)
TreeFam:
Gene Tree for LOC105373386 (if available)

No data available for Orthologs for LOC105373386 Gene

Paralogs for LOC105373386 Gene

No data available for Paralogs for LOC105373386 Gene

Variants for LOC105373386 Gene

Sequence variations from dbSNP and Humsavar for LOC105373386 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1060500715 uncertain-significance, Frontometaphyseal dysplasia, Melnick-Needles syndrome, Oto-palato-digital syndrome, type II, Periventricular nodular heterotopia 1 154,348,859(-) ACAAC/AC upstream_transcript_variant
rs1060500720 uncertain-significance, Frontometaphyseal dysplasia, Melnick-Needles syndrome, Oto-palato-digital syndrome, type II, Periventricular nodular heterotopia 1 154,349,458(-) G/T upstream_transcript_variant
rs1060500721 uncertain-significance, Frontometaphyseal dysplasia, Melnick-Needles syndrome, Oto-palato-digital syndrome, type II, Periventricular nodular heterotopia 1, not specified 154,348,991(-) C/T upstream_transcript_variant
rs199677057 likely-benign, Frontometaphyseal dysplasia, Melnick-Needles syndrome, Oto-palato-digital syndrome, type II, Periventricular nodular heterotopia 1 154,349,836(-) G/A/C upstream_transcript_variant
rs200694807 benign, Frontometaphyseal dysplasia, Melnick-Needles syndrome, Oto-palato-digital syndrome, type II, Periventricular nodular heterotopia 1 154,349,522(-) T/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105373386 Gene

Disorders for LOC105373386 Gene

No disorders were found for LOC105373386 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373386 Gene

Publications for LOC105373386 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC105373386 Gene

Sources for LOC105373386 Gene

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