Aliases for LOC105373021 Gene

Subcategory (RNA class) for LOC105373021 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105373021 Gene

  • Uncharacterized LOC105373021 3
  • NONHSAG033844.2 91
  • HSALNG0135243 164
  • Lnc-NCF4-2 165

External Ids for LOC105373021 Gene

Previous GeneCards Identifiers for LOC105373021 Gene

  • GC22U901133

Summaries for LOC105373021 Gene

GeneCards Summary for LOC105373021 Gene

LOC105373021 (Uncharacterized LOC105373021) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC105373021 include Bardet-Biedl Syndrome 19 and Bardet-Biedl Syndrome.

Additional gene information for LOC105373021 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105373021 Gene

Genomics for LOC105373021 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105373021 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J036703 Promoter 1.3 EPDnew Ensembl 600.7 -0.5 -475 1.2 PRDM10 REST KDM1A ZNF692 ZIC2 POLR2A PATZ1 EZH2 ZNF600 ZNF561 ENSG00000234688 CACNG2 LOC105373021 IFT27 EIF3D
GH22J036757 Enhancer 0.8 Ensembl ENCODE 0.2 +53.1 53132 2 CTCF ZNF143 REST RAD21 TRIM22 YY1 USF1 SMC3 ZNF654 SIN3A ENSG00000287773 ENSG00000234979 PVALB ENSG00000229971 TEX33 EIF3D NCF4 IL2RB ENSG00000231467 TMPRSS6
GH22J036734 Enhancer 0.4 ENCODE 0.3 +31.0 31015 0.2 RUNX3 BATF SPI1 piR-57460-454 piR-46681 LOC105373021 CACNG2 IFT27
GH22J036733 Enhancer 0.3 ENCODE 0.3 +30.4 30440 0.9 RUNX3 SPI1 piR-57460-454 ENSG00000234979 PVALB ENSG00000229971 IL2RB ENSG00000231467 TMPRSS6 ENSG00000234688 piR-46681 LOC105373021
GH22J036732 Enhancer 0.3 Ensembl 0.3 +28.4 28425 0.6 ZNF623 CACNG2 ENSG00000234688 ENSG00000234979 PVALB ENSG00000229971 IL2RB ENSG00000231467 TMPRSS6 TEX33 piR-57460-454
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105373021 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105373021 Gene

Genomic Locations for LOC105373021 Gene
chr22:36,703,876-36,767,089
(GRCh38/hg38)
Size:
63,214 bases
Orientation:
Plus strand

Genomic View for LOC105373021 Gene

Genes around LOC105373021 on UCSC Golden Path with GeneCards custom track
LOC105373021 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105373021 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105373021 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105373021 Gene

Proteins for LOC105373021 Gene

Post-translational modifications for LOC105373021 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105373021 Gene

Domains & Families for LOC105373021 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105373021 Gene

Function for LOC105373021 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105373021 Gene

Localization for LOC105373021 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105373021 Gene

Pathways & Interactions for LOC105373021 Gene

PathCards logo

SuperPathways for LOC105373021 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105373021 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105373021 Gene

Drugs & Compounds for LOC105373021 Gene

No Compound Related Data Available

Transcripts for LOC105373021 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105373021 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A77622_9606 lncRNA 556 2

RefSeq: NR_134623,

LNCipedia: lnc-NCF4-2:5,

URS00008B55B2_9606 lncRNA 634 3

LncBook: HSALNT0277546,

LNCipedia: lnc-NCF4-2:3,

NONCODE: NONHSAT085121.2,

URS0000D5B250_9606 lncRNA 669 2

LncBook: HSALNT0277545,

LNCipedia: lnc-NCF4-2:4,

URS00008BD528_9606 lncRNA 609 1

LNCipedia: lnc-NCF4-2:2,

LOC105373021 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105373021 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105373021 Gene

No ASD Table

Relevant External Links for LOC105373021 Gene

GeneLoc Exon Structure for
LOC105373021

Expression for LOC105373021 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105373021 Gene

Orthologs for LOC105373021 Gene

No data available for Orthologs and Evolution for LOC105373021 Gene

Paralogs for LOC105373021 Gene

No data available for Paralogs for LOC105373021 Gene

Variants for LOC105373021 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105373021 Gene

SNP ID Clinical significance and condition Chr 22 pos Variation AA Info Type
749725 Likely Benign: not provided 36,763,952(+) C/T MISSENSE_VARIANT
782352 Likely Benign: not provided 36,762,982(+) G/A SYNONYMOUS_VARIANT
786380 Benign: not provided 36,762,941(+) G/A MISSENSE_VARIANT
833782 Likely Benign: not provided 36,762,981(+) C/T MISSENSE_VARIANT
840668 Uncertain Significance: not provided 36,763,949(+) G/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LOC105373021 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105373021 Gene

Disorders for LOC105373021 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC105373021 Gene - From: GeneCards

Disorder Aliases PubMed IDs
bardet-biedl syndrome 19
  • bbs19
bardet-biedl syndrome
  • biedl-bardet syndrome
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105373021: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105373021 Gene

Publications for LOC105373021 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC105373021 Gene

Products for LOC105373021 Gene

Sources for LOC105373021 Gene