Aliases for LOC105372990 Gene

Subcategory (RNA class) for LOC105372990 Gene

lncRNA

Aliases for LOC105372990 Gene

  • Uncharacterized LOC105372990 3
  • VLGN1945 3

External Ids for LOC105372990 Gene

Previous GeneCards Identifiers for LOC105372990 Gene

  • GC22U901149

Summaries for LOC105372990 Gene

GeneCards Summary for LOC105372990 Gene

LOC105372990 (Uncharacterized LOC105372990) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372990 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372990 Gene

Genomics for LOC105372990 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105372990 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J030432 Enhancer 0.6 dbSUPER 600.7 +0.3 269 0.9 KDM1A SP1 CEBPA JUND BCOR SPI1 ADNP HNF4A RXRA GLIS1 LOC105372990 piR-30583 ENSG00000249590 SEC14L2 SEC14L3 CASTOR1 SEC14L6 RNF215 MTFP1
GH22J030434 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +2.9 2879 2.5 ZNF629 ETV6 NR2C1 ELF4 GABPA ZFX TCF7 CTCF ZXDB GATAD2B ENSG00000273428 SEC14L3 SEC14L2 ENSG00000249590 CASTOR1 SMTN ENSG00000230137 LOC101060052 LOC105372990 lnc-MTFP1-5
GH22J030429 Enhancer 0.3 dbSUPER 0.7 -2.7 -2692 1.4 ZKSCAN1 CASTOR1 SEC14L2 ENSG00000249590 SEC14L3 LOC105372990 MTFP1 piR-36949
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372990 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372990 Gene

Genomic Locations for LOC105372990 Gene
chr22:30,432,686-30,436,501
(GRCh38/hg38)
Size:
3,816 bases
Orientation:
Plus strand

Genomic View for LOC105372990 Gene

Genes around LOC105372990 on UCSC Golden Path with GeneCards custom track
LOC105372990 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372990 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372990 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372990 Gene

Proteins for LOC105372990 Gene

Post-translational modifications for LOC105372990 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372990 Gene

Domains & Families for LOC105372990 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372990 Gene

Function for LOC105372990 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372990 Gene

Localization for LOC105372990 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372990 Gene

Pathways & Interactions for LOC105372990 Gene

PathCards logo

SuperPathways for LOC105372990 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372990 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372990 Gene

Drugs & Compounds for LOC105372990 Gene

No Compound Related Data Available

Transcripts for LOC105372990 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372990 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC462F_9606 lncRNA 2413 1

RefSeq: NR_148046,

LOC105372990 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105372990 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372990 Gene

No ASD Table

Relevant External Links for LOC105372990 Gene

GeneLoc Exon Structure for
LOC105372990

Expression for LOC105372990 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105372990

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372990 Gene

Orthologs for LOC105372990 Gene

No data available for Orthologs and Evolution for LOC105372990 Gene

Paralogs for LOC105372990 Gene

No data available for Paralogs for LOC105372990 Gene

Variants for LOC105372990 Gene

Additional dbSNP identifiers (rs#s) for LOC105372990 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372990 Gene

Disorders for LOC105372990 Gene

No disorders were found for LOC105372990 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372990 Gene

Publications for LOC105372990 Gene

  1. Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N … Tung JY (BMC medical genetics 2012) 3
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3

No data available for Mastermind for LOC105372990 Gene

Products for LOC105372990 Gene

Sources for LOC105372990 Gene