LOC105372988 Gene (RNA Gene)

Uncharacterized LOC105372988

GC22M030182
GIFtS:
6
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Aliases for LOC105372988 Gene

Subcategory (RNA class) for LOC105372988 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105372988 Gene

  • Uncharacterized LOC105372988 3
  • Novel Transcript 5
  • NONHSAG033660.2 91
  • HSALNG0134865 164
  • AC002378.1 5
  • Lnc-LIF-1 165

External Ids for LOC105372988 Gene

Previous GeneCards Identifiers for LOC105372988 Gene

  • GC22U901219

Summaries for LOC105372988 Gene

GeneCards Summary for LOC105372988 Gene

LOC105372988 (Uncharacterized LOC105372988) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372988 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372988 Gene

Genomics for LOC105372988 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105372988 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22J030201 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.5 -532 12.3 HNRNPL GATAD2A ATF7 TEAD4 PRDM10 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ LOC105372988 TUG1 EWSR1 MORC2 PES1 OSM SF3A1 HORMAD2-AS1 LOC91370 MTMR3
GH22J030181 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 13.2 +23.5 23462 4.2 JUND PRDM1 PKNOX1 ZNF24 DPF2 HDAC1 SOX6 EP300 ZBTB44 ZNF766 LIF ASCC2 HORMAD2-AS1 LOC105372988 LIF-AS1 MTMR3 DUSP18 OSM SF3A1 RPS3AP51
GH22J030158 Enhancer 1 FANTOM5 Ensembl ENCODE 11.8 +47.4 47396 2 ZNF512 CEBPB NFE2 FOXA2 ZNF316 MAFF FOS YY1 MAFK MAFG LIF LOC105372988 LIF-AS1 CASTOR1 MTMR3 RPS3AP51 HORMAD2
GH22J030230 Enhancer 0.5 dbSUPER 13 -23.8 -23835 0.8 POLR2A TBP ZNF18 SMAD5 ZBTB40 ZBTB6 ZNF121 PML LOC105372988 LIF TBC1D10A ENSG00000248751 SEC14L2 ENSG00000249590 LIF-AS1 HSALNG0134867 HORMAD2
GH22J030151 Enhancer 0.5 FANTOM5 Ensembl 12.2 +55.2 55196 4.4 ZNF184 ZNF398 LIF MTMR3 HORMAD2-AS1 LOC105372988 LIF-AS1 CASTOR1 ASCC2 RPS3AP51 HORMAD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372988 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372988 Gene

Genomic Locations for LOC105372988 Gene
chr22:30,182,818-30,207,197
(GRCh38/hg38)
Size:
24,380 bases
Orientation:
Minus strand
chr22:30,580,633-30,603,098
(GRCh37/hg19)
Size:
22,466 bases
Orientation:
Minus strand

Genomic View for LOC105372988 Gene

Genes around LOC105372988 on UCSC Golden Path with GeneCards custom track
LOC105372988 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372988 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105372988 Gene

Proteins for LOC105372988 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105372988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372988 Gene

Domains & Families for LOC105372988 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372988 Gene

Function for LOC105372988 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105372988 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372988 Gene

Localization for LOC105372988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372988 Gene

Pathways & Interactions for LOC105372988 Gene

PathCards logo

SuperPathways for LOC105372988 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372988 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372988 Gene

Drugs & Compounds for LOC105372988 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105372988 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372988 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEFDEA_9606 lncRNA 2210 1

Ensembl: ENST00000432360 (view in UCSC) ,

URS000020F742_9606 lncRNA 298 2

LNCipedia: lnc-LIF-1:1,

NONCODE: NONHSAT084759.2,

URS00009B01FE_9606 lncRNA 298 2

LncBook: HSALNT0276851,

NONCODE: NONHSAT192801.1,

LOC105372988 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372988 Gene

No ASD Table

Relevant External Links for LOC105372988 Gene

GeneLoc Exon Structure for
LOC105372988

No data available for mRNA/cDNA for LOC105372988 Gene

Expression for LOC105372988 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372988 Gene

Orthologs for LOC105372988 Gene

Evolution for LOC105372988 Gene

ENSEMBL:
Gene Tree for LOC105372988 (if available)
TreeFam:
Gene Tree for LOC105372988 (if available)

No data available for Orthologs for LOC105372988 Gene

Paralogs for LOC105372988 Gene

No data available for Paralogs for LOC105372988 Gene

Variants for LOC105372988 Gene

Additional dbSNP identifiers (rs#s) for LOC105372988 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372988 Gene

Disorders for LOC105372988 Gene

No disorders were found for LOC105372988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372988 Gene

Publications for LOC105372988 Gene

No publications were found for LOC105372988 Gene.

No data available for Mastermind for LOC105372988 Gene

Products for LOC105372988 Gene

Sources for LOC105372988 Gene