Aliases for LOC105372980 Gene

Subcategory (RNA class) for LOC105372980 Gene

lncRNA

Aliases for LOC105372980 Gene

  • Uncharacterized LOC105372980 3
  • Novel Transcript 5
  • AL050402.2 5

External Ids for LOC105372980 Gene

Previous GeneCards Identifiers for LOC105372980 Gene

  • GC22U901230

Summaries for LOC105372980 Gene

GeneCards Summary for LOC105372980 Gene

LOC105372980 (Uncharacterized LOC105372980) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372980 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372980 Gene

Genomics for LOC105372980 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105372980 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J027432 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 600.7 -1.3 -1301 4.4 KDM1A PRDM1 ZKSCAN1 POLR2A CTCF HNF4A CEBPB FOS RAD21 CHD2 LOC105372980 ENSG00000280445 LINC01638 MN1
GH22J027438 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.7 +2.3 2328 1.6 ZIC2 ZMYM3 ZFP36 GATA2 LOC105372980 ENSG00000227880 LINC01638 MN1
GH22J027420 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 -15.9 -15891 3.6 ATF7 PRDM10 ZNF629 ZNF692 FOXA1 ZIC2 PATZ1 ZNF24 ZBTB20 ZXDB ENSG00000280445 ENSG00000231369 LOC105372980 LINC01638 MN1
GH22J027440 Enhancer 0.5 Ensembl CraniofacialAtlas 0.4 +5.9 5908 4 CREB1 SPI1 LOC105372980 ENSG00000227880 LINC01638 MN1
GH22J027456 Enhancer 0.6 Ensembl ENCODE 0.4 +21.2 21161 1.7 ZIC2 SP1 JUND NR3C1 MAFK NFE2L2 ENSG00000227880 LOC105372980 LINC01638 MN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372980 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372980 Gene

Genomic Locations for LOC105372980 Gene
chr22:27,436,292-27,441,774
(GRCh38/hg38)
Size:
5,483 bases
Orientation:
Plus strand

Genomic View for LOC105372980 Gene

Genes around LOC105372980 on UCSC Golden Path with GeneCards custom track
LOC105372980 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372980 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372980 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372980 Gene

Proteins for LOC105372980 Gene

Post-translational modifications for LOC105372980 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372980 Gene

Domains & Families for LOC105372980 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372980 Gene

Function for LOC105372980 Gene

Phenotypes From GWAS Catalog for LOC105372980 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372980 Gene

Localization for LOC105372980 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372980 Gene

Pathways & Interactions for LOC105372980 Gene

PathCards logo

SuperPathways for LOC105372980 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372980 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372980 Gene

Drugs & Compounds for LOC105372980 Gene

No Compound Related Data Available

Transcripts for LOC105372980 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372980 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EEDAB9_9606 lncRNA 856 1

Ensembl: ENST00000654206 (view in UCSC) ,

LOC105372980 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372980 Gene

No ASD Table

Relevant External Links for LOC105372980 Gene

GeneLoc Exon Structure for
LOC105372980

No data available for mRNA/cDNA for LOC105372980 Gene

Expression for LOC105372980 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372980 Gene

Orthologs for LOC105372980 Gene

Evolution for LOC105372980 Gene

ENSEMBL:
Gene Tree for LOC105372980 (if available)
TreeFam:
Gene Tree for LOC105372980 (if available)

No data available for Orthologs for LOC105372980 Gene

Paralogs for LOC105372980 Gene

No data available for Paralogs for LOC105372980 Gene

Variants for LOC105372980 Gene

Additional dbSNP identifiers (rs#s) for LOC105372980 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372980 Gene

Disorders for LOC105372980 Gene

No disorders were found for LOC105372980 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372980 Gene

Publications for LOC105372980 Gene

No publications were found for LOC105372980 Gene.

No data available for Mastermind for LOC105372980 Gene

Products for LOC105372980 Gene

Sources for LOC105372980 Gene