Aliases for LOC105372877 Gene

Subcategory (RNA class) for LOC105372877 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372877 Gene

  • Uncharacterized LOC105372877 3

External Ids for LOC105372877 Gene

Previous GeneCards Identifiers for LOC105372877 Gene

  • GC01U905065

Summaries for LOC105372877 Gene

GeneCards Summary for LOC105372877 Gene

LOC105372877 (Uncharacterized LOC105372877) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372877 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372877 Gene

Genomics for LOC105372877 Gene

GeneHancer (GH) Regulatory Elements for LOC105372877 Gene

Promoters and enhancers for LOC105372877 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J206752 Enhancer 0.9 FANTOM5 Ensembl 750.6 -1.9 -1907 3.8 MLLT1 PRDM1 MTA1 RNF2 ZNF512 ZSCAN4 ZNF24 MTA2 ZNF512B YBX3 LOC105372877 EIF2D MAPKAPK2 IL10 CD46 ENSG00000234981 IL24 IL20 PIGR FCAMR
GH01J206765 Enhancer 1 ENCODE dbSUPER 0.4 -14.8 -14846 1.1 SMARCE1 MYC ETV6 RELA L3MBTL2 MAX TEAD4 CBFA2T2 TFE3 MLLT1 RF00017-458 lnc-IL19-2 IL24 PIGR FCAMR IL20 C4BPB LOC105372877
GH01J206757 Enhancer 0.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.5 -6507 3.8 ZSCAN29 IL24 IL20 MAPKAPK2 FCMR IL10 IKBKE RASSF5 lnc-IL19-2 LOC105372877
GH01J206748 Enhancer 0.5 FANTOM5 Ensembl 0.6 +2.8 2793 3.2 RNF2 CTCF ENSG00000199349 MAPKAPK2 IL19 IL10 IL20 RASSF5 IKBKE LOC105372877
GH01J206763 Enhancer 0.3 Ensembl 0.4 -11.7 -11707 0.2 ZNF512 ZNF366 IL24 PIGR FCAMR IL20 lnc-IL19-2 LOC105372877
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372877 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372877 Gene

Genomic Locations for LOC105372877 Gene
chr1:206,748,331-206,751,594
(GRCh38/hg38)
Size:
3,264 bases
Orientation:
Minus strand

Genomic View for LOC105372877 Gene

Genes around LOC105372877 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372877 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372877 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372877 Gene

Proteins for LOC105372877 Gene

Post-translational modifications for LOC105372877 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372877 Gene

Domains & Families for LOC105372877 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372877 Gene

Function for LOC105372877 Gene

Phenotypes From GWAS Catalog for LOC105372877 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372877 Gene

Localization for LOC105372877 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372877 Gene

Pathways & Interactions for LOC105372877 Gene

PathCards logo

SuperPathways for LOC105372877 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372877 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372877 Gene

Drugs & Compounds for LOC105372877 Gene

No Compound Related Data Available

Transcripts for LOC105372877 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372877 Gene

No ASD Table

Relevant External Links for LOC105372877 Gene

GeneLoc Exon Structure for
LOC105372877

No data available for mRNA/cDNA for LOC105372877 Gene

Expression for LOC105372877 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372877 Gene

Orthologs for LOC105372877 Gene

No data available for Orthologs and Evolution for LOC105372877 Gene

Paralogs for LOC105372877 Gene

No data available for Paralogs for LOC105372877 Gene

Variants for LOC105372877 Gene

Sequence variations from dbSNP and Humsavar for LOC105372877 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000141820 -- 206,748,112(-) C/A downstream_transcript_variant
rs1000179695 -- 206,753,828(-) G/A upstream_transcript_variant
rs1000618199 -- 206,748,376(-) T/G non_coding_transcript_variant
rs1001458581 -- 206,749,224(-) A/G/T non_coding_transcript_variant
rs1003051975 -- 206,750,260(-) A/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372877 Gene

Disorders for LOC105372877 Gene

No disorders were found for LOC105372877 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372877 Gene

Publications for LOC105372877 Gene

No publications were found for LOC105372877 Gene.

No data available for External Links for LOC105372877 Gene

Products for LOC105372877 Gene

Sources for LOC105372877 Gene