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Aliases for LOC105372816 Gene

Subcategory (RNA class) for LOC105372816 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372816 Gene

  • Uncharacterized LOC105372816 3

External Ids for LOC105372816 Gene

Previous GeneCards Identifiers for LOC105372816 Gene

  • GC21U900712

Summaries for LOC105372816 Gene

GeneCards Summary for LOC105372816 Gene

LOC105372816 (Uncharacterized LOC105372816) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372816 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372816 Gene

Genomics for LOC105372816 Gene

GeneHancer (GH) Regulatory Elements for LOC105372816 Gene

Promoters and enhancers for LOC105372816 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J042666 Enhancer 1 Ensembl ENCODE 600.7 -0.2 -183 4.7 SP1 CTCF PRDM10 ZIC2 POLR2A KLF7 ZNF629 PATZ1 KLF9 MTA3 LOC105372816 TFF2 PDE9A ENSG00000225731
GH21J042652 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.4 +12.7 12672 4.2 ELF3 ZNF148 PRDM1 MZF1 GLIS2 RXRA ZBTB8A PRDM10 ZIC2 REST PDE9A LOC101928255 PRDM15 ENSG00000227698 WDR4 ENSG00000235023 ENSG00000233754 LOC105372816
GH21J042672 Enhancer 0.9 ENCODE 0.4 -7.2 -7222 2.9 ZNF121 NFIB ZSCAN21 SP7 GLIS2 PKNOX1 ZBTB8A ZNF600 PRDM10 ZIC2 LOC105372816 PDE9A ENSG00000225731
GH21J042683 Enhancer 0.9 FANTOM5 ENCODE 0.4 -17.5 -17466 1.8 NFIB ZNF544 ZNF300 ZNF776 NFIC ZNF195 ZNF621 MYC MAX ENSG00000235772 ENSG00000227698 RRP1B PKNOX1 ENSG00000225731 PDE9A UBASH3A ABCG1 WDR4 LOC105372816
GH21J042670 Enhancer 0.5 FANTOM5 0.7 -4.1 -4114 0.2 SP7 OSR2 ZBTB17 IKZF1 TFF2 PDE9A LOC105372816 ENSG00000225731
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372816 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372816 Gene

Genomic Locations for LOC105372816 Gene
chr21:42,663,282-42,666,981
(GRCh38/hg38)
Size:
3,700 bases
Orientation:
Minus strand

Genomic View for LOC105372816 Gene

Genes around LOC105372816 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372816 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372816 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372816 Gene

Proteins for LOC105372816 Gene

Post-translational modifications for LOC105372816 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372816 Gene

Domains & Families for LOC105372816 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372816 Gene

Function for LOC105372816 Gene

Phenotypes From GWAS Catalog for LOC105372816 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372816 Gene

Localization for LOC105372816 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372816 Gene

Pathways & Interactions for LOC105372816 Gene

PathCards logo

SuperPathways for LOC105372816 Gene

No Data Available

Interacting Proteins for LOC105372816 Gene

Gene Ontology (GO) - Biological Process for LOC105372816 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372816 Gene

Drugs & Compounds for LOC105372816 Gene

No Compound Related Data Available

Transcripts for LOC105372816 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372816 Gene

No ASD Table

Relevant External Links for LOC105372816 Gene

GeneLoc Exon Structure for
LOC105372816

No data available for mRNA/cDNA for LOC105372816 Gene

Expression for LOC105372816 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372816 Gene

Orthologs for LOC105372816 Gene

No data available for Orthologs and Evolution for LOC105372816 Gene

Paralogs for LOC105372816 Gene

No data available for Paralogs for LOC105372816 Gene

Variants for LOC105372816 Gene

Sequence variations from dbSNP and Humsavar for LOC105372816 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000035298 -- 42,669,328(-) A/C upstream_transcript_variant
rs1000085777 -- 42,669,531(-) A/G upstream_transcript_variant
rs1000394020 -- 42,669,164(-) C/T upstream_transcript_variant
rs1001149953 -- 42,664,110(-) C/T non_coding_transcript_variant
rs1001213434 -- 42,669,756(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372816 Gene

Disorders for LOC105372816 Gene

No disorders were found for LOC105372816 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372816 Gene

Publications for LOC105372816 Gene

No publications were found for LOC105372816 Gene.

No data available for External Links for LOC105372816 Gene

Products for LOC105372816 Gene

Sources for LOC105372816 Gene

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