Aliases for LOC105372795 Gene

Subcategory (RNA class) for LOC105372795 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC105372795 Gene

  • Uncharacterized LOC105372795 3
  • NONHSAG032797 92
  • HSALNG0132975 167
  • Lnc-HLCS-2 168

External Ids for LOC105372795 Gene

Previous GeneCards Identifiers for LOC105372795 Gene

  • GC21U900774

Summaries for LOC105372795 Gene

GeneCards Summary for LOC105372795 Gene

LOC105372795 (Uncharacterized LOC105372795) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372795 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372795 Gene

Genomics for LOC105372795 Gene

GeneHancer (GH) Regulatory Elements for LOC105372795 Gene

Promoters and enhancers for LOC105372795 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J037063 Enhancer 0.5 Ensembl 500.7 -0.2 -185 1.2 EP300 RFX1 MYNN ZBTB17 ZNF184 BMI1 KLF17 ZNF384 INSM2 LOC105372795 TTC3 MRPL20P1 HLCS ENSG00000207416 PIGP lnc-HLCS-5 lnc-TTC3-4
GH21J037059 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.7 +2.9 2934 3.4 EP300 FOXK2 ZSCAN5C TCF12 FOS ZNF639 CTCF ZNF10 ZIC2 TCF7 PIGP TTC3 MRPL20P1 ENSG00000207416 HLCS LOC105372795 piR-53029-077 lnc-TTC3-4
GH21J037057 Enhancer 0.2 Ensembl 0.4 +6.0 6015 1.2 MRPL20P1 HLCS ENSG00000207416 LOC105372795 piR-53029-077 lnc-TTC3-4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372795 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372795 Gene

Genomic Locations for LOC105372795 Gene
chr21:37,063,040-37,064,216
(GRCh38/hg38)
Size:
1,177 bases
Orientation:
Minus strand

Genomic View for LOC105372795 Gene

Genes around LOC105372795 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372795 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372795 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372795 Gene

Proteins for LOC105372795 Gene

Post-translational modifications for LOC105372795 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372795 Gene

Domains & Families for LOC105372795 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372795 Gene

Function for LOC105372795 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372795 Gene

Localization for LOC105372795 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372795 Gene

Pathways & Interactions for LOC105372795 Gene

PathCards logo

SuperPathways for LOC105372795 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105372795 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372795 Gene

Drugs & Compounds for LOC105372795 Gene

No Compound Related Data Available

Transcripts for LOC105372795 Gene

mRNA/cDNA for LOC105372795 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372795 Gene

No ASD Table

Relevant External Links for LOC105372795 Gene

GeneLoc Exon Structure for
LOC105372795

Expression for LOC105372795 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105372795

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372795 Gene

Orthologs for LOC105372795 Gene

No data available for Orthologs and Evolution for LOC105372795 Gene

Paralogs for LOC105372795 Gene

No data available for Paralogs for LOC105372795 Gene

Variants for LOC105372795 Gene

Additional dbSNP identifiers (rs#s) for LOC105372795 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372795 Gene

Disorders for LOC105372795 Gene

No disorders were found for LOC105372795 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372795 Gene

Publications for LOC105372795 Gene

  1. Developmental changes in the transcriptome of human cerebral cortex tissue: long noncoding RNA transcripts. (PMID: 23377288) Lipovich L … Wildman DE (Cerebral cortex (New York, N.Y. : 1991) 2014) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC105372795 Gene

Products for LOC105372795 Gene

Sources for LOC105372795 Gene