Aliases for LOC105372633 Gene

Subcategory (RNA class) for LOC105372633 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC105372633 Gene

  • Uncharacterized LOC105372633 3
  • NONHSAG031891.2 91
  • Lnc-SLC2A10-9 165

External Ids for LOC105372633 Gene

Previous GeneCards Identifiers for LOC105372633 Gene

  • GC20U900938

Summaries for LOC105372633 Gene

GeneCards Summary for LOC105372633 Gene

LOC105372633 (Uncharacterized LOC105372633) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372633 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372633 Gene

Genomics for LOC105372633 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105372633 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J046404 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.3 -278 4.2 SP1 HNRNPL CREB1 GATAD2A PRDM10 ZNF629 TFE3 ZNF692 RCOR2 FOS ELMO2 LOC105372633 MKRN7P SLC35C2 NCOA5 TP53RK RF00017-3604
GH20J046410 Enhancer 1 ENCODE CraniofacialAtlas 0.7 +4.3 4337 1.1 HNRNPL CTCF JUND ZNF143 ZSCAN4 PKNOX1 REST RAD21 ZNF740 GABPA ELMO2 ZSWIM1 SLC35C2 NCOA5 LOC105372633
GH20J046398 Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -5.5 -5518 5.1 FOXA1 GABPA PRDM1 SP1 HDAC1 CEBPB RUNX3 TGIF2 TCF12 YY1 RF00017-3604 ELMO2 SLC35C2 CD40 LOC105372633
GH20J046430 Enhancer 0.7 FANTOM5 Ensembl 0.4 +24.4 24402 0.8 ZSCAN4 MNT NFATC1 EZH2 CEBPB ELMO2 SLC12A5 CDH22 ZNF663P ZNF334 LOC105372633 SLC35C2 ENSG00000283757
GH20J046422 Enhancer 0.4 Ensembl 0.4 +17.1 17122 1 CEBPB YY1 CEBPG HLF ELMO2 LOC105372633 ZNF663P SLC35C2 ENSG00000283757
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372633 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372633 Gene

Genomic Locations for LOC105372633 Gene
chr20:46,406,779-46,455,687
(GRCh38/hg38)
Size:
48,909 bases
Orientation:
Plus strand

Genomic View for LOC105372633 Gene

Genes around LOC105372633 on UCSC Golden Path with GeneCards custom track
LOC105372633 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372633 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372633 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372633 Gene

Proteins for LOC105372633 Gene

Post-translational modifications for LOC105372633 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372633 Gene

Domains & Families for LOC105372633 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372633 Gene

Function for LOC105372633 Gene

Phenotypes From GWAS Catalog for LOC105372633 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372633 Gene

Localization for LOC105372633 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372633 Gene

Pathways & Interactions for LOC105372633 Gene

PathCards logo

SuperPathways for LOC105372633 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372633 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372633 Gene

Drugs & Compounds for LOC105372633 Gene

No Compound Related Data Available

Transcripts for LOC105372633 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372633 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC4458_9606 lncRNA 1872 1

RefSeq: NR_146919,

URS00008B3AFF_9606 lncRNA 3670 2

LNCipedia: lnc-SLC2A10-9:6,

NONCODE: NONHSAT080017.2,

URS0000D5926E_9606 lncRNA 12344 1

LNCipedia: lnc-SLC2A10-9:4,

URS0000D5DA09_9606 lncRNA 12317 1

LNCipedia: lnc-SLC2A10-9:5,

URS0000D57753_9606 lncRNA 12316 1

LNCipedia: lnc-SLC2A10-9:3,

LOC105372633 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105372633 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372633 Gene

No ASD Table

Relevant External Links for LOC105372633 Gene

GeneLoc Exon Structure for
LOC105372633

Expression for LOC105372633 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372633 Gene

Orthologs for LOC105372633 Gene

No data available for Orthologs and Evolution for LOC105372633 Gene

Paralogs for LOC105372633 Gene

No data available for Paralogs for LOC105372633 Gene

Variants for LOC105372633 Gene

Additional dbSNP identifiers (rs#s) for LOC105372633 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372633 Gene

Disorders for LOC105372633 Gene

No disorders were found for LOC105372633 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372633 Gene

Publications for LOC105372633 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC105372633 Gene

Products for LOC105372633 Gene

Sources for LOC105372633 Gene