Aliases for LOC105372620 Gene

Subcategory (RNA class) for LOC105372620 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372620 Gene

  • Uncharacterized LOC105372620 3

External Ids for LOC105372620 Gene

Previous GeneCards Identifiers for LOC105372620 Gene

  • GC20U901002

Summaries for LOC105372620 Gene

GeneCards Summary for LOC105372620 Gene

LOC105372620 (Uncharacterized LOC105372620) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372620 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372620 Gene

Genomics for LOC105372620 Gene

GeneHancer (GH) Regulatory Elements for LOC105372620 Gene

Promoters and enhancers for LOC105372620 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J040676 Enhancer 0.8 Ensembl dbSUPER 750.6 +1.7 1674 3.2 DACH1 EZH2 GMEB1 PKNOX1 POLR2A ZBTB2 FOXA2 CREB1 ZKSCAN1 CUX1 LOC105372620 HSALNG0130120
GH20J040686 Promoter/Enhancer 1.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -9.6 -9626 6.2 CTCF ZBTB6 POLR2A MIXL1 NFYC HLF RAD21 MNT SP1 TFE3 MAFB CHD6 PLCG1 LOC105372620
GH20J040681 Enhancer 1 ENCODE dbSUPER 0.6 -3.7 -3723 0.9 MLX RBPJ NR2F6 MIXL1 HLF RAD21 ZNF652 RERE ELF3 SP1 LOC105372620 MAFB
GH20J040683 Enhancer 0.6 FANTOM5 ENCODE dbSUPER 0.6 -4.9 -4865 0.8 EZH2 MAFB LOC105372620
GH20J040680 Enhancer 0.3 dbSUPER 0.6 -2.4 -2355 0.8 JUNB BATF LOC105372620 MAFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372620 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372620 Gene

Genomic Locations for LOC105372620 Gene
chr20:40,677,232-40,678,675
(GRCh38/hg38)
Size:
1,444 bases
Orientation:
Minus strand

Genomic View for LOC105372620 Gene

Genes around LOC105372620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372620 Gene

Proteins for LOC105372620 Gene

Post-translational modifications for LOC105372620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372620 Gene

Domains & Families for LOC105372620 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372620 Gene

Function for LOC105372620 Gene

Phenotypes From GWAS Catalog for LOC105372620 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372620 Gene

Localization for LOC105372620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372620 Gene

Pathways & Interactions for LOC105372620 Gene

PathCards logo

SuperPathways for LOC105372620 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372620 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372620 Gene

Drugs & Compounds for LOC105372620 Gene

No Compound Related Data Available

Transcripts for LOC105372620 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372620 Gene

No ASD Table

Relevant External Links for LOC105372620 Gene

GeneLoc Exon Structure for
LOC105372620

No data available for mRNA/cDNA for LOC105372620 Gene

Expression for LOC105372620 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372620 Gene

Orthologs for LOC105372620 Gene

No data available for Orthologs and Evolution for LOC105372620 Gene

Paralogs for LOC105372620 Gene

No data available for Paralogs for LOC105372620 Gene

Variants for LOC105372620 Gene

Sequence variations from dbSNP and Humsavar for LOC105372620 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1002157063 -- 40,679,922(-) C/A upstream_transcript_variant
rs1002185885 -- 40,679,181(-) T/C upstream_transcript_variant
rs1002486903 -- 40,678,084(-) G/T intron_variant
rs1005299368 -- 40,677,060(-) C/T downstream_transcript_variant
rs1005643801 -- 40,679,167(-) C/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372620 Gene

Disorders for LOC105372620 Gene

No disorders were found for LOC105372620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372620 Gene

Publications for LOC105372620 Gene

No publications were found for LOC105372620 Gene.

No data available for External Links for LOC105372620 Gene

Products for LOC105372620 Gene

Sources for LOC105372620 Gene