LOC105372617 Gene (RNA Gene)

Uncharacterized LOC105372617

GC20M040298
GIFtS:
3

Aliases for LOC105372617 Gene

Subcategory (RNA class) for LOC105372617 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372617 Gene

  • Uncharacterized LOC105372617 3

External Ids for LOC105372617 Gene

Previous GeneCards Identifiers for LOC105372617 Gene

  • GC20U901137

Summaries for LOC105372617 Gene

GeneCards Summary for LOC105372617 Gene

LOC105372617 (Uncharacterized LOC105372617) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372617 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372617 Gene

Genomics for LOC105372617 Gene

GeneHancer (GH) Regulatory Elements for LOC105372617 Gene

Promoters and enhancers for LOC105372617 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J040287 Enhancer 0.8 Ensembl ENCODE 0.4 +13.8 13760 3.8 TCF7L2 ZNF217 GLIS2 CREB1 PRDM10 CTBP1 CHD2 ZNF692 RFX1 PKNOX1 LOC105372617 HSALNG0130095
GH20J040278 Enhancer 0.8 FANTOM5 ENCODE 0.3 +22.3 22255 1.6 SP1 SP7 ZIC2 ZBTB8A ZNF316 NFE2 MAFG RAD21 NFE2L2 FOS HSALNG0130095 MAFB LOC105372617
GH20J040293 Enhancer 0.5 Ensembl ENCODE 0.4 +7.0 6991 1.9 NR2F2 JUN LOC105372617 HSALNG0130095
GH20J040304 Enhancer 0.3 Ensembl 0.6 -2.6 -2640 0.6 HNF1A LOC105372617 HSALNG0130098
GH20J040282 Enhancer 0.4 FANTOM5 Ensembl 0.4 +19.2 19188 0.7 HSALNG0130095 LOC105372617
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372617 Gene

Genomic Locations for LOC105372617 Gene
chr20:40,298,752-40,301,661
(GRCh38/hg38)
Size:
2,910 bases
Orientation:
Minus strand

Genomic View for LOC105372617 Gene

Genes around LOC105372617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372617 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105372617 Gene

Proteins for LOC105372617 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105372617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372617 Gene

Domains & Families for LOC105372617 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372617 Gene

Function for LOC105372617 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372617 Gene

Localization for LOC105372617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372617 Gene

Pathways & Interactions for LOC105372617 Gene

PathCards logo

SuperPathways for LOC105372617 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372617 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372617 Gene

Drugs & Compounds for LOC105372617 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105372617 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372617 Gene

No ASD Table

Relevant External Links for LOC105372617 Gene

GeneLoc Exon Structure for
LOC105372617

No data available for mRNA/cDNA for LOC105372617 Gene

Expression for LOC105372617 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372617 Gene

Orthologs for LOC105372617 Gene

No data available for Orthologs and Evolution for LOC105372617 Gene

Paralogs for LOC105372617 Gene

No data available for Paralogs for LOC105372617 Gene

Variants for LOC105372617 Gene

Sequence variations from dbSNP and Humsavar for LOC105372617 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000269769 -- 40,312,816(-) T/A/C upstream_transcript_variant
rs1000485054 -- 40,313,112(-) C/A upstream_transcript_variant
rs1000828996 -- 40,309,029(-) A/G intron_variant
rs1001177993 -- 40,309,311(-) AAAAAAA/AAA/AAAA/AAAAAAAA intron_variant
rs1001467058 -- 40,303,846(-) T/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372617 Gene

Disorders for LOC105372617 Gene

No disorders were found for LOC105372617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372617 Gene

Publications for LOC105372617 Gene

No publications were found for LOC105372617 Gene.

No data available for External Links for LOC105372617 Gene

Products for LOC105372617 Gene

Sources for LOC105372617 Gene