LOC105372441 Gene (RNA Gene)

Uncharacterized LOC105372441

GC19P050831
GIFtS:
8
See more...

Aliases for LOC105372441 Gene

Data sources for LOC105372441 Gene:

Subcategory (RNA class) for LOC105372441 Gene

lncRNA

Aliases for LOC105372441 Gene

External Ids for LOC105372441 Gene

Previous GeneCards Identifiers for LOC105372441 Gene

  • GC19U901947

Summaries for LOC105372441 Gene

GeneCards Summary for LOC105372441 Gene

LOC105372441 (Uncharacterized LOC105372441) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372441 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372441 Gene

Genomics for LOC105372441 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105372441 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J050831 Enhancer 0.5 Ensembl 250.7 +0.7 719 0.4 ZNF623 PTBP1 ESRRA ZFP36 ZMYM3 ZNF768 KDM1A BCOR ENSG00000267968 LOC105372441 KLK1 KLK15
GH19J050830 Enhancer 0.3 Ensembl 250.7 +0.1 119 0.4 GATA2 ZFHX2 ENSG00000267968 LOC105372441 KLK1 KLK15
GH19J050835 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +5.8 5819 1.4 TBP ZBTB10 FEZF1 MNT IKZF1 SMAD5 MBD2 POLR2A BHLHE40 THAP11 KLK15 ZNF175 NUP62 PTOV1-AS2 LINC01869 C19orf48 SNORD88C KLK2 SNORD88A SNORD88B
GH19J050837 Promoter/Enhancer 0.9 EPDnew dbSUPER 0.4 +7.1 7132 0.1 ZBTB21 GLIS1 ESRRA ZNF768 ZBTB7A ZNF366 ZNF629 KDM1A PATZ1 MAFK KLK15 LINC01869 C19orf48 SNORD88C KLK2 SNORD88A SNORD88B ENSG00000267968 LOC105372441 KLK3
GH19J050838 Enhancer 0.8 Ensembl dbSUPER 0.4 +8.3 8252 0.5 CTCF TRIM22 SMC3 NR2F1 L3MBTL2 CREB1 ATF7 ZNF629 CREM NBN KLK15 LINC01869 C19orf48 SNORD88C KLK2 SNORD88A SNORD88B ENSG00000267968 LOC105372441 RF00017-3058
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372441 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372441 Gene

Latest Assembly
chr19:50,830,282-50,854,521
(GRCh38/hg38)
Size:
24,240 bases
Orientation:
Plus strand

Previous Assembly
chr19:51,333,786-51,354,399
(GRCh37/hg19 by Entrez Gene)
Size:
20,614 bases
Orientation:
Plus strand

Genomic View for LOC105372441 Gene

Genes around LOC105372441 on UCSC Golden Path with GeneCards custom track
LOC105372441 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105372441 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372441 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105372441 Gene

Proteins for LOC105372441 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LOC105372441 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372441 Gene

Domains & Families for LOC105372441 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372441 Gene

Function for LOC105372441 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372441 Gene

Localization for LOC105372441 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372441 Gene

Pathways & Interactions for LOC105372441 Gene

PathCards logo

SuperPathways for LOC105372441 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372441 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372441 Gene

Drugs & Compounds for LOC105372441 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LOC105372441 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372441 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000812129_9606 lncRNA 463 3

RefSeq: NR_131205,

LNCipedia: lnc-KLK3-1:6,

NONCODE: NONHSAT179899.1,

URS0000812118_9606 lncRNA 446 2

RefSeq: NR_131203,

LNCipedia: lnc-KLK3-1:5,

URS00008B26AF_9606 lncRNA 243 3

LncBook: HSALNT0261608,

LNCipedia: lnc-KLK3-1:3,

NONCODE: NONHSAT067381.2,

URS00008B2DB8_9606 lncRNA 206 3

LncBook: HSALNT0261607,

LNCipedia: lnc-KLK3-1:2,

NONCODE: NONHSAT067380.2,

URS00008C06F0_9606 lncRNA 216 2

LNCipedia: lnc-KLK3-1:1,

NONCODE: NONHSAT067379.2,

LOC105372441 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105372441 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372441 Gene

No ASD Table

Relevant External Links for LOC105372441 Gene

GeneLoc Exon Structure for
LOC105372441

Expression for LOC105372441 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372441 Gene

Orthologs for LOC105372441 Gene

No data available for Orthologs and Evolution for LOC105372441 Gene

Paralogs for LOC105372441 Gene

No data available for Paralogs for LOC105372441 Gene

Variants for LOC105372441 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105372441 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372441 Gene

Disorders for LOC105372441 Gene

No disorders were found for LOC105372441 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372441 Gene

Publications for LOC105372441 Gene

  1. Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation. (PMID: 24778216) Hsieh CL … Kantoff PW (Proceedings of the National Academy of Sciences of the United States of America 2014) 3

No data available for Mastermind for LOC105372441 Gene

Products for LOC105372441 Gene

Sources for LOC105372441 Gene