Aliases for LOC105372440 Gene

Subcategory (RNA class) for LOC105372440 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC105372440 Gene

  • Uncharacterized LOC105372440 3
  • NONHSAG026323.2 91
  • Lnc-C19orf48-1 165
  • CTD-2568A17.1 3

External Ids for LOC105372440 Gene

Previous GeneCards Identifiers for LOC105372440 Gene

  • GC19U902109

Summaries for LOC105372440 Gene

GeneCards Summary for LOC105372440 Gene

LOC105372440 (Uncharacterized LOC105372440) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372440 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372440 Gene

Genomics for LOC105372440 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105372440 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J050786 Promoter 0.4 EPDnew 600.7 +0.0 30 0.1 RFX1 LOC105372440 lnc-ACP4-1 lnc-ACP4-2 ACP4 ENSG00000261341 GPR32
GH19J050783 Enhancer 0.9 Ensembl ENCODE 0.7 +2.5 2473 0.9 CTCF ZNF143 REST RAD21 BRD9 ZNF501 TRIM22 ZNF747 RUNX3 ZNF444 ZNF175 NUP62 ACP4 LOC105372440 ENSG00000261341 GPR32
GH19J050777 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 0.4 +8.0 7988 1.2 LEF1 KDM1A ZIC2 ZNF24 EZH2 TCF7L2 RFX1 EGR1 BMI1 TCF7 ACP4 ZNF473 C19orf48 LOC105372440 GPR32 ENSG00000261341
GH19J050779 Enhancer 0.6 ENCODE 0.4 +5.9 5861 1.9 PRDM10 IKZF1 PKNOX1 SP2 GLIS1 SMARCA4 SP3 HDGF MNT SMARCA5 ACP4 KLK1 LOC105372440 GPR32 ENSG00000261341
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372440 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105372440 Gene

Genomic Locations for LOC105372440 Gene
chr19:50,776,141-50,786,210
(GRCh38/hg38)
Size:
10,070 bases
Orientation:
Minus strand

Genomic View for LOC105372440 Gene

Genes around LOC105372440 on UCSC Golden Path with GeneCards custom track
LOC105372440 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105372440 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372440 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372440 Gene

Proteins for LOC105372440 Gene

Post-translational modifications for LOC105372440 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372440 Gene

Domains & Families for LOC105372440 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372440 Gene

Function for LOC105372440 Gene

Phenotypes From GWAS Catalog for LOC105372440 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372440 Gene

Localization for LOC105372440 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372440 Gene

Pathways & Interactions for LOC105372440 Gene

PathCards logo

SuperPathways for LOC105372440 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372440 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372440 Gene

Drugs & Compounds for LOC105372440 Gene

No Compound Related Data Available

Transcripts for LOC105372440 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372440 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76768_9606 lncRNA 588 2

RefSeq: NR_134883,

LNCipedia: lnc-C19orf48-1:4,

URS000006CC8B_9606 lncRNA 495 2

LNCipedia: lnc-C19orf48-1:2,

NONCODE: NONHSAT067356.2,

URS00008C2EE6_9606 lncRNA 372 2

LNCipedia: lnc-C19orf48-1:3,

NONCODE: NONHSAT067357.2,

URS000000CF75_9606 lncRNA 279 1

LNCipedia: lnc-C19orf48-1:1,

LOC105372440 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105372440 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372440 Gene

No ASD Table

Relevant External Links for LOC105372440 Gene

GeneLoc Exon Structure for
LOC105372440

Expression for LOC105372440 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105372440

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372440 Gene

Orthologs for LOC105372440 Gene

No data available for Orthologs and Evolution for LOC105372440 Gene

Paralogs for LOC105372440 Gene

No data available for Paralogs for LOC105372440 Gene

Variants for LOC105372440 Gene

Additional dbSNP identifiers (rs#s) for LOC105372440 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372440 Gene

Disorders for LOC105372440 Gene

No disorders were found for LOC105372440 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372440 Gene

Publications for LOC105372440 Gene

No publications were found for LOC105372440 Gene.

No data available for Mastermind for LOC105372440 Gene

Products for LOC105372440 Gene

Sources for LOC105372440 Gene