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Aliases for LOC105372440 Gene
Subcategory (RNA class) for LOC105372440 Gene
lncRNA
Number of RNA Genes sources:
2 / 17
Aliases for LOC105372440 Gene
External Ids for LOC105372440 Gene
- Entrez Gene: 105372440
Previous GeneCards Identifiers for LOC105372440 Gene
- GC19U902109
Summaries for LOC105372440 Gene
GeneCards Summary for LOC105372440 Gene
LOC105372440 (Uncharacterized LOC105372440) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC105372440 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372440 Gene
Genomics for LOC105372440 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105372440 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH19J050786 | Promoter | 0.4 | EPDnew | 600.7 | +0.0 | 30 | 0.1 | RFX1 | LOC105372440 lnc-ACP4-1 lnc-ACP4-2 ACP4 ENSG00000261341 GPR32 | |
| GH19J050783 | Enhancer | 0.9 | Ensembl ENCODE | 0.7 | +2.5 | 2473 | 0.9 | CTCF ZNF143 REST RAD21 BRD9 ZNF501 TRIM22 ZNF747 RUNX3 ZNF444 | ZNF175 NUP62 ACP4 LOC105372440 ENSG00000261341 GPR32 | |
| GH19J050777 | Promoter/Enhancer | 1.3 | EPDnew Ensembl ENCODE | 0.4 | +8.0 | 7988 | 1.2 | LEF1 KDM1A ZIC2 ZNF24 EZH2 TCF7L2 RFX1 EGR1 BMI1 TCF7 | ACP4 ZNF473 C19orf48 LOC105372440 GPR32 ENSG00000261341 | |
| GH19J050779 | Enhancer | 0.6 | ENCODE | 0.4 | +5.9 | 5861 | 1.9 | PRDM10 IKZF1 PKNOX1 SP2 GLIS1 SMARCA4 SP3 HDGF MNT SMARCA5 | ACP4 KLK1 LOC105372440 GPR32 ENSG00000261341 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105372440 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105372440 Gene
Genomic Locations for LOC105372440 Gene
- chr19:50,776,141-50,786,210
- (GRCh38/hg38)
- Size:
- 10,070 bases
- Orientation:
- Minus strand
Genomic View for LOC105372440 Gene
Genes around LOC105372440 on UCSC Golden Path with GeneCards custom track
LOC105372440 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 19q13.33 by Entrez Gene
LOC105372440 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105372440 Gene
Proteins for LOC105372440 Gene
Post-translational modifications for LOC105372440 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105372440
- Origene Custom Protein Services for LOC105372440
No data available for DME Specific Peptides for LOC105372440 Gene
Domains & Families for LOC105372440 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372440 Gene
Function for LOC105372440 Gene
Phenotypes From GWAS Catalog for LOC105372440 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372440 Gene
Localization for LOC105372440 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372440 Gene
Transcripts for LOC105372440 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372440 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000A76768_9606 | lncRNA | 588 | 2 |
RefSeq: NR_134883, LNCipedia: lnc-C19orf48-1:4, |
| URS000006CC8B_9606 | lncRNA | 495 | 2 |
LNCipedia: lnc-C19orf48-1:2, NONCODE: NONHSAT067356.2, |
| URS00008C2EE6_9606 | lncRNA | 372 | 2 |
LNCipedia: lnc-C19orf48-1:3, NONCODE: NONHSAT067357.2, |
| URS000000CF75_9606 | lncRNA | 279 | 1 |
LNCipedia: lnc-C19orf48-1:1, |
LOC105372440 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105372440 Gene
- 2 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105372440 Gene
- GeneLoc Exon Structure for
- LOC105372440
Expression for LOC105372440 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC105372440
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372440 Gene
Orthologs for LOC105372440 Gene
No data available for Orthologs and Evolution for LOC105372440 Gene
Paralogs for LOC105372440 Gene
No data available for Paralogs for LOC105372440 Gene
Variants for LOC105372440 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372440 Gene
Disorders for LOC105372440 Gene
No disorders were found for LOC105372440 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372440 Gene
Publications for LOC105372440 Gene
No publications were found for LOC105372440 Gene.
No data available for Mastermind for LOC105372440 Gene
Products for LOC105372440 Gene
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- Custom Assay Services
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- Origene Custom Protein Services for LOC105372440
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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Sources for LOC105372440 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB