Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105372427 Gene

Subcategory (RNA class) for LOC105372427 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372427 Gene

  • Uncharacterized LOC105372427 3

External Ids for LOC105372427 Gene

Previous GeneCards Identifiers for LOC105372427 Gene

  • GC19U902023

Summaries for LOC105372427 Gene

GeneCards Summary for LOC105372427 Gene

LOC105372427 (Uncharacterized LOC105372427) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372427 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372427 Gene

Genomics for LOC105372427 Gene

GeneHancer (GH) Regulatory Elements for LOC105372427 Gene

Promoters and enhancers for LOC105372427 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047279 Enhancer 0.9 FANTOM5 Ensembl 600.7 -0.1 -118 1.2 ZNF121 CTCF ZBTB33 PRDM10 ZNF24 HDAC2 ZNF580 ZBTB17 KLF13 PTBP1 LOC105372427 CCDC9 NOP53-AS1 ZC3H4 ZNF541 BICRA INAFM1
GH19J047278 Enhancer 0.6 ENCODE 600.7 -1.7 -1700 0.2 CBFA2T2 MLLT1 IKZF1 EGR1 HDAC2 FOSL1 NCOR1 TCF12 CBFA2T3 LOC105372427 INAFM1
GH19J047285 Enhancer 0.9 Ensembl ENCODE 0.7 +4.3 4282 0.8 CTCF RAD21 ZNF547 IKZF1 ZBTB33 PKNOX1 ZNF143 REST ZSCAN4 TRIM22 LOC105372427 C5AR1
GH19J047288 Enhancer 1.2 Ensembl ENCODE 0.4 +9.7 9681 3.6 ZNF121 ZSCAN21 TFE3 SP7 SP1 KLF14 PRDM1 EGR1 SMARCA4 IKZF1 C5AR1 CCDC9 LOC105372427
GH19J047277 Enhancer 0.8 ENCODE 0.7 -2.3 -2256 0.8 MLLT1 SMARCA4 MTA1 IKZF1 ARID2 TRIM22 ZNF24 MTA2 YBX1 ZSCAN5C CCDC9 INAFM1 LOC105372427
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372427 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372427 Gene

Genomic Locations for LOC105372427 Gene
chr19:47,280,119-47,292,076
(GRCh38/hg38)
Size:
11,958 bases
Orientation:
Plus strand

Genomic View for LOC105372427 Gene

Genes around LOC105372427 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372427 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372427 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372427 Gene

Proteins for LOC105372427 Gene

Post-translational modifications for LOC105372427 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372427 Gene

Domains & Families for LOC105372427 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372427 Gene

Function for LOC105372427 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372427 Gene

Localization for LOC105372427 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372427 Gene

Pathways & Interactions for LOC105372427 Gene

PathCards logo

SuperPathways for LOC105372427 Gene

No Data Available

Interacting Proteins for LOC105372427 Gene

Gene Ontology (GO) - Biological Process for LOC105372427 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372427 Gene

Drugs & Compounds for LOC105372427 Gene

No Compound Related Data Available

Transcripts for LOC105372427 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372427 Gene

No ASD Table

Relevant External Links for LOC105372427 Gene

GeneLoc Exon Structure for
LOC105372427

No data available for mRNA/cDNA for LOC105372427 Gene

Expression for LOC105372427 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372427 Gene

Orthologs for LOC105372427 Gene

No data available for Orthologs and Evolution for LOC105372427 Gene

Paralogs for LOC105372427 Gene

No data available for Paralogs for LOC105372427 Gene

Variants for LOC105372427 Gene

Sequence variations from dbSNP and Humsavar for LOC105372427 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000100614 -- 47,290,156(+) G/A intron_variant
rs1000255242 -- 47,284,800(+) C/T intron_variant
rs1000354479 -- 47,278,525(+) C/T upstream_transcript_variant
rs1000391501 -- 47,284,976(+) A/T intron_variant
rs1000572915 -- 47,291,544(+) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372427 Gene

Disorders for LOC105372427 Gene

No disorders were found for LOC105372427 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372427 Gene

Publications for LOC105372427 Gene

No publications were found for LOC105372427 Gene.

No data available for External Links for LOC105372427 Gene

Products for LOC105372427 Gene

Sources for LOC105372427 Gene

Content
Loading form....