Aliases for LOC105372421 Gene

Subcategory (RNA class) for LOC105372421 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372421 Gene

  • Uncharacterized LOC105372421 3
  • CTC-344H19.4 3

External Ids for LOC105372421 Gene

Previous GeneCards Identifiers for LOC105372421 Gene

  • GC19U901963

Summaries for LOC105372421 Gene

GeneCards Summary for LOC105372421 Gene

LOC105372421 (Uncharacterized LOC105372421) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372421 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372421 Gene

Genomics for LOC105372421 Gene

GeneHancer (GH) Regulatory Elements for LOC105372421 Gene

Promoters and enhancers for LOC105372421 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J046024 Promoter 0.8 EPDnew Ensembl 750.6 -0.2 -244 0.6 ZMYM3 LOC105372421 PGLYRP1 PTGIR MIR769
GH19J046021 Enhancer 0.6 ENCODE 750.6 -1.7 -1710 0.1 ZNF548 GLIS2 ZIC2 REST PRDM4 BCOR ZFHX2 CTCF IKZF1 KLF16 LOC105372421 PGLYRP1 CCDC61 CLASRP ENSG00000268810 MIR769
GH19J046025 Promoter 0.5 Ensembl 750.6 -0.8 -847 0.2 USF1 ZKSCAN1 LOC105372421 PGLYRP1 MIR769
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372421 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372421 Gene

Genomic Locations for LOC105372421 Gene
chr19:46,023,348-46,028,489
(GRCh38/hg38)
Size:
5,142 bases
Orientation:
Plus strand

Genomic View for LOC105372421 Gene

Genes around LOC105372421 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372421 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372421 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372421 Gene

Proteins for LOC105372421 Gene

Post-translational modifications for LOC105372421 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372421 Gene

Domains & Families for LOC105372421 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372421 Gene

Function for LOC105372421 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372421 Gene

Localization for LOC105372421 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372421 Gene

Pathways & Interactions for LOC105372421 Gene

PathCards logo

SuperPathways for LOC105372421 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105372421 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372421 Gene

Drugs & Compounds for LOC105372421 Gene

No Compound Related Data Available

Transcripts for LOC105372421 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372421 Gene

No ASD Table

Relevant External Links for LOC105372421 Gene

GeneLoc Exon Structure for
LOC105372421

No data available for mRNA/cDNA for LOC105372421 Gene

Expression for LOC105372421 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372421 Gene

Orthologs for LOC105372421 Gene

No data available for Orthologs and Evolution for LOC105372421 Gene

Paralogs for LOC105372421 Gene

No data available for Paralogs for LOC105372421 Gene

Variants for LOC105372421 Gene

Sequence variations from dbSNP and Humsavar for LOC105372421 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000398772 -- 46,024,133(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000461297 -- 46,026,739(+) C/A/G/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000516432 -- 46,022,395(+) C/T upstream_transcript_variant
rs1000590038 -- 46,022,536(+) G/A/C upstream_transcript_variant
rs1000839971 -- 46,030,836(+) C/T genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372421 Gene

Disorders for LOC105372421 Gene

No disorders were found for LOC105372421 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372421 Gene

Publications for LOC105372421 Gene

No publications were found for LOC105372421 Gene.

No data available for External Links for LOC105372421 Gene

Products for LOC105372421 Gene

Sources for LOC105372421 Gene