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Aliases for LOC105372407 Gene

Subcategory (RNA class) for LOC105372407 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372407 Gene

  • Uncharacterized LOC105372407 3

External Ids for LOC105372407 Gene

Previous GeneCards Identifiers for LOC105372407 Gene

  • GC19U902134

Summaries for LOC105372407 Gene

GeneCards Summary for LOC105372407 Gene

LOC105372407 (Uncharacterized LOC105372407) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372407 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372407 Gene

Genomics for LOC105372407 Gene

GeneHancer (GH) Regulatory Elements for LOC105372407 Gene

Promoters and enhancers for LOC105372407 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J042520 Enhancer 0.5 Ensembl 600.7 -1.4 -1368 1.2 SCRT2 ATF2 ATF7 POLR2A LOC105372407 RNU4-60P CXCL17 LOC732229 CEACAM1 LIPE-AS1
GH19J042526 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.4 +5.3 5340 3.8 CC2D1A ELF3 CTCF POLR2A MAFK TFE3 SP1 PPARG SP5 MLLT1 CEACAM1 CXCL17 ENSG00000268355 LOC105372407 LIPE-AS1
GH19J042496 Enhancer 1.1 ENCODE dbSUPER 0.3 -24.4 -24433 3.9 ZNF652 ELF3 NKRF POLR2A CEBPG ZNF687 SP1 HNF1A PPARG SP5 CXCL17 ZNF526 CD177 MEGF8 LOC732229 LOC105372407 LIPE-AS1
GH19J042488 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 -33.7 -33651 1 ELF3 CEBPG RERE TFE3 PPARG PRDM1 ZNF384 KAT8 HMG20B SOX13 CXCL17 LOC732229 LOC105372407 LIPE-AS1
GH19J042512 Enhancer 0.7 ENCODE 0.4 -9.7 -9650 0.5 NKRF ZNF121 ZNF687 MLLT1 IKZF1 IKZF2 ZIC2 TRIM22 PKNOX1 DPF2 CXCL17 LOC105372407 LOC732229 CEACAM1 LIPE-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372407 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372407 Gene

Genomic Locations for LOC105372407 Gene
chr19:42,522,769-42,525,966
(GRCh38/hg38)
Size:
3,198 bases
Orientation:
Plus strand

Genomic View for LOC105372407 Gene

Genes around LOC105372407 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372407 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372407 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372407 Gene

Proteins for LOC105372407 Gene

Post-translational modifications for LOC105372407 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372407 Gene

Domains & Families for LOC105372407 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372407 Gene

Function for LOC105372407 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372407 Gene

Localization for LOC105372407 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372407 Gene

Pathways & Interactions for LOC105372407 Gene

PathCards logo

SuperPathways for LOC105372407 Gene

No Data Available

Interacting Proteins for LOC105372407 Gene

Gene Ontology (GO) - Biological Process for LOC105372407 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372407 Gene

Drugs & Compounds for LOC105372407 Gene

No Compound Related Data Available

Transcripts for LOC105372407 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372407 Gene

No ASD Table

Relevant External Links for LOC105372407 Gene

GeneLoc Exon Structure for
LOC105372407

No data available for mRNA/cDNA for LOC105372407 Gene

Expression for LOC105372407 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372407 Gene

Orthologs for LOC105372407 Gene

No data available for Orthologs and Evolution for LOC105372407 Gene

Paralogs for LOC105372407 Gene

No data available for Paralogs for LOC105372407 Gene

Variants for LOC105372407 Gene

Sequence variations from dbSNP and Humsavar for LOC105372407 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000677126 -- 42,525,216(+) G/A intron_variant
rs1000726265 -- 42,525,547(+) C/G/T intron_variant
rs1001181779 -- 42,522,338(+) G/A upstream_transcript_variant
rs1001397200 -- 42,521,950(+) C/T upstream_transcript_variant
rs1001593076 -- 42,523,400(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372407 Gene

Disorders for LOC105372407 Gene

No disorders were found for LOC105372407 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372407 Gene

Publications for LOC105372407 Gene

No publications were found for LOC105372407 Gene.

No data available for External Links for LOC105372407 Gene

Products for LOC105372407 Gene

Sources for LOC105372407 Gene

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