Aliases for LOC105372401 Gene

Subcategory (RNA class) for LOC105372401 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC105372401 Gene

  • Uncharacterized LOC105372401 3
  • Novel Transcript, Antisense To CCDC97 And HNRNPUL1 5
  • AC011462.5 5

External Ids for LOC105372401 Gene

Previous GeneCards Identifiers for LOC105372401 Gene

  • GC19U902013
  • GC19M041308
  • GC19M041395

Summaries for LOC105372401 Gene

GeneCards Summary for LOC105372401 Gene

LOC105372401 (Uncharacterized LOC105372401) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105372401 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372401 Gene

Genomics for LOC105372401 Gene

GeneHancer (GH) Regulatory Elements for LOC105372401 Gene

Promoters and enhancers for LOC105372401 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041294 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +7.1 7111 17 FOXK2 HNRNPK ZBTB40 ZNF217 EP300 CTCF ZSCAN5C SIN3A NRF1 TCF12 CCDC97 HNRNPUL1 ZNF526 SNRPA ZNF574 ENSG00000269843 COQ8B TGFB1 ITPKC TMEM91
GH19J041321 Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 -14.9 -14890 8.4 EP300 FOXK2 HNRNPK ZBTB40 CTCF TCF12 NRF1 POLR2G NONO GTF2E2 TGFB1 HNRNPUL1 B9D2 CEACAM4 CCDC97 TMEM91 CEACAM21 CEACAM3 CYP2A13 LOC105372401
GH19J041334 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -25.0 -24989 5.2 FOS ZNF362 IKZF1 ZNF24 POLR2A ZNF770 ZNF121 TGFB1 CEACAM21 lnc-B9D2-2 LOC105372401
GH19J041341 Enhancer 0.9 FANTOM5 Ensembl dbSUPER 0.3 -32.7 -32689 3.4 CTCF ZNF623 TCF12 ZNF189 POLR2A RAD21 ZFP36 RBFOX2 ZEB1 lnc-B9D2-2 B9D2 CEACAM21 HNRNPUL1 TGFB1 CCDC97 LOC105372401
GH19J041319 Enhancer 0.5 dbSUPER 0.4 -10.0 -9989 1 POLR2A POLR2G NR3C1 ZNF513 SUPT5H AGO2 AGO1 HNRNPL RBFOX2 TGFB1 LOC105372401 CCDC97 lnc-B9D2-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372401 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372401 Gene

Genomic Locations for LOC105372401 Gene
chr19:41,307,206-41,310,412
(GRCh38/hg38)
Size:
3,207 bases
Orientation:
Minus strand

Genomic View for LOC105372401 Gene

Genes around LOC105372401 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372401 Gene

Proteins for LOC105372401 Gene

Post-translational modifications for LOC105372401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372401 Gene

Domains & Families for LOC105372401 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372401 Gene

Function for LOC105372401 Gene

Phenotypes From GWAS Catalog for LOC105372401 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372401 Gene

Localization for LOC105372401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372401 Gene

Pathways & Interactions for LOC105372401 Gene

PathCards logo

SuperPathways for LOC105372401 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC105372401 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105372401 Gene

Drugs & Compounds for LOC105372401 Gene

No Compound Related Data Available

Transcripts for LOC105372401 Gene

mRNA/cDNA for LOC105372401 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372401 Gene

No ASD Table

Relevant External Links for LOC105372401 Gene

GeneLoc Exon Structure for
LOC105372401

Expression for LOC105372401 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372401 Gene

Orthologs for LOC105372401 Gene

Evolution for LOC105372401 Gene

ENSEMBL:
Gene Tree for LOC105372401 (if available)
TreeFam:
Gene Tree for LOC105372401 (if available)

No data available for Orthologs for LOC105372401 Gene

Paralogs for LOC105372401 Gene

No data available for Paralogs for LOC105372401 Gene

Variants for LOC105372401 Gene

Additional dbSNP identifiers (rs#s) for LOC105372401 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372401 Gene

Disorders for LOC105372401 Gene

No disorders were found for LOC105372401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372401 Gene

Publications for LOC105372401 Gene

No publications were found for LOC105372401 Gene.

No data available for Mastermind for LOC105372401 Gene

Products for LOC105372401 Gene

Sources for LOC105372401 Gene