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Aliases for LOC105372399 Gene

Subcategory (RNA class) for LOC105372399 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105372399 Gene

  • Uncharacterized LOC105372399 3
  • AC011500.2 5

External Ids for LOC105372399 Gene

Previous GeneCards Identifiers for LOC105372399 Gene

  • GC19U902077

Summaries for LOC105372399 Gene

GeneCards Summary for LOC105372399 Gene

LOC105372399 (Uncharacterized LOC105372399) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372399 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372399 Gene

Genomics for LOC105372399 Gene

GeneHancer (GH) Regulatory Elements for LOC105372399 Gene

Promoters and enhancers for LOC105372399 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I039546 Enhancer 0.5 ENCODE 550.8 -0.7 -652 0.2 CC2D1A PKNOX1 RFX1 KLF9 BMI1 ZBTB5 LOC105372399 DLL3 LEUTX EID2 GC19P039533
GH19I039551 Enhancer 0.7 ENCODE 0.8 +4.1 4148 0.2 CTCF ZNF384 ZNF2 RAD21 ZNF324 CC2D1A GATA3 ZNF143 SMC3 ZNF444 DLL3 TIMM50 PLEKHG2 ZFP36 LOC105372399 GC19P039533 ENSG00000269188
GH19I039542 Enhancer 0.7 ENCODE dbSUPER 0.8 -4.2 -4204 2.1 ZNF121 ZNF707 POLR2A ZSCAN4 PRDM10 ZNF785 ZBTB17 HNRNPL RPS16 LGALS4 EID2 LOC105372399 GC19P039533
GH19I039544 Enhancer 0.7 ENCODE dbSUPER 0.8 -2.4 -2407 0.6 ZNF121 GLIS1 PRDM10 WT1 EID2 LOC105372399 GC19P039533
GH19I039558 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 +11.1 11076 1.8 HDGF PKNOX1 CLOCK FOXA2 ARID4B FEZF1 ZNF366 ZSCAN5C ATF7 BCLAF1 PLEKHG2 EID2B CLC DLL3 LEUTX MED29 LGALS4 RPS16 PAF1 ZFP36
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372399 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372399 Gene

Genomic Locations for LOC105372399 Gene
chr19:39,547,468-39,555,859
(GRCh38/hg38)
Size:
8,392 bases
Orientation:
Plus strand
chr19:40,043,674-40,045,996
(GRCh37/hg19)

Genomic View for LOC105372399 Gene

Genes around LOC105372399 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372399 Gene

Proteins for LOC105372399 Gene

Post-translational modifications for LOC105372399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372399 Gene

Domains & Families for LOC105372399 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372399 Gene

Function for LOC105372399 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372399 Gene

Localization for LOC105372399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372399 Gene

Pathways & Interactions for LOC105372399 Gene

SuperPathways for LOC105372399 Gene

No Data Available

Interacting Proteins for LOC105372399 Gene

Gene Ontology (GO) - Biological Process for LOC105372399 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372399 Gene

Drugs & Compounds for LOC105372399 Gene

No Compound Related Data Available

Transcripts for LOC105372399 Gene

mRNA/cDNA for LOC105372399 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372399 Gene

No ASD Table

Relevant External Links for LOC105372399 Gene

GeneLoc Exon Structure for
LOC105372399

Expression for LOC105372399 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372399 Gene

Orthologs for LOC105372399 Gene

Evolution for LOC105372399 Gene

ENSEMBL:
Gene Tree for LOC105372399 (if available)
TreeFam:
Gene Tree for LOC105372399 (if available)

No data available for Orthologs for LOC105372399 Gene

Paralogs for LOC105372399 Gene

No data available for Paralogs for LOC105372399 Gene

Variants for LOC105372399 Gene

Sequence variations from dbSNP and Humsavar for LOC105372399 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000031107 -- 39,548,270(+) T/C intron_variant
rs1000068520 -- 39,549,240(+) T/G intron_variant
rs1000652734 -- 39,551,615(+) A/C intron_variant
rs1000672662 -- 39,550,768(+) T/C intron_variant
rs1001176944 -- 39,556,059(+) C/A downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372399 Gene

Disorders for LOC105372399 Gene

No disorders were found for LOC105372399 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372399 Gene

Publications for LOC105372399 Gene

No publications were found for LOC105372399 Gene.

Products for LOC105372399 Gene

Sources for LOC105372399 Gene

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