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Aliases for LOC105372399 Gene

Subcategory (RNA class) for LOC105372399 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372399 Gene

  • Uncharacterized LOC105372399 3
  • AC011500.2 5

External Ids for LOC105372399 Gene

Previous GeneCards Identifiers for LOC105372399 Gene

  • GC19U902077

Summaries for LOC105372399 Gene

GeneCards Summary for LOC105372399 Gene

LOC105372399 (Uncharacterized LOC105372399) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372399 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372399 Gene

Genomics for LOC105372399 Gene

GeneHancer (GH) Regulatory Elements for LOC105372399 Gene

Promoters and enhancers for LOC105372399 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J039546 Enhancer 0.5 ENCODE 650.7 -0.7 -652 0.2 CC2D1A PKNOX1 RFX1 KLF9 BMI1 KLF14 ZBTB5 LOC105372399 DLL3 LEUTX EID2 GC19P039533
GH19J039427 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.7 -115.3 -115322 9.7 MLX ZFP64 DMAP1 IRF4 YY1 E2F8 ZNF416 ZNF143 SP3 NFYC RPS16 HNRNPL FBL ZNF780B AKT2 PLEKHG2 RN7SL566P ENSG00000269688 SUPT5H EID2B
GH19J039397 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.7 -140.4 -140393 20 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 ZFP36 PAF1 HNRNPL FBL ZNF780B SUPT5H RN7SL566P ZNF780A ENSG00000269688 AKT2
GH19J038647 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 -887.7 -887675 25.6 ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC ZC3H11A ACTN4 HNRNPL ZFP30 ZNF607 ZNF781 ZNF573 SUPT5H ENSG00000267152 PAK4 RN7SL566P
GH19J039125 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 14.6 -420.1 -420115 4.5 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF416 ZNF143 SP3 NFYC PAK4 PIR35823 HNRNPL FBL ENSG00000269172 ZNF780B ZNF780A ENSG00000269688 EID2B RN7SL566P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372399 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372399 Gene

Genomic Locations for LOC105372399 Gene
chr19:39,547,468-39,555,859
(GRCh38/hg38)
Size:
8,392 bases
Orientation:
Plus strand
chr19:40,043,674-40,045,996
(GRCh37/hg19)
Size:
2,323 bases
Orientation:
Plus strand

Genomic View for LOC105372399 Gene

Genes around LOC105372399 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372399 Gene

Proteins for LOC105372399 Gene

Post-translational modifications for LOC105372399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372399 Gene

Domains & Families for LOC105372399 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372399 Gene

Function for LOC105372399 Gene

Phenotypes From GWAS Catalog for LOC105372399 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372399 Gene

Localization for LOC105372399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372399 Gene

Pathways & Interactions for LOC105372399 Gene

SuperPathways for LOC105372399 Gene

No Data Available

Interacting Proteins for LOC105372399 Gene

Gene Ontology (GO) - Biological Process for LOC105372399 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372399 Gene

Drugs & Compounds for LOC105372399 Gene

No Compound Related Data Available

Transcripts for LOC105372399 Gene

mRNA/cDNA for LOC105372399 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372399 Gene

No ASD Table

Relevant External Links for LOC105372399 Gene

GeneLoc Exon Structure for
LOC105372399

Expression for LOC105372399 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372399 Gene

Orthologs for LOC105372399 Gene

Evolution for LOC105372399 Gene

ENSEMBL:
Gene Tree for LOC105372399 (if available)
TreeFam:
Gene Tree for LOC105372399 (if available)

No data available for Orthologs for LOC105372399 Gene

Paralogs for LOC105372399 Gene

No data available for Paralogs for LOC105372399 Gene

Variants for LOC105372399 Gene

Sequence variations from dbSNP and Humsavar for LOC105372399 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000031107 -- 39,548,270(+) T/C intron_variant
rs1000068520 -- 39,549,240(+) T/G intron_variant
rs1000652734 -- 39,551,615(+) A/C intron_variant
rs1000672662 -- 39,550,768(+) T/C intron_variant
rs1001176944 -- 39,556,059(+) C/A downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372399 Gene

Disorders for LOC105372399 Gene

No disorders were found for LOC105372399 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372399 Gene

Publications for LOC105372399 Gene

No publications were found for LOC105372399 Gene.

Products for LOC105372399 Gene

Sources for LOC105372399 Gene

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