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Aliases for LOC105372397 Gene

Subcategory (RNA class) for LOC105372397 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372397 Gene

  • Uncharacterized LOC105372397 3
  • CTB-186G2.1 3
  • AC008649.1 5

External Ids for LOC105372397 Gene

Previous GeneCards Identifiers for LOC105372397 Gene

  • GC19U902096

Summaries for LOC105372397 Gene

GeneCards Summary for LOC105372397 Gene

LOC105372397 (Uncharacterized LOC105372397) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372397 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372397 Gene

Genomics for LOC105372397 Gene

GeneHancer (GH) Regulatory Elements for LOC105372397 Gene

Promoters and enhancers for LOC105372397 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J038595 Promoter/Enhancer 1.4 Ensembl ENCODE 650.7 0.0 -20 1.2 HDGF PKNOX1 FEZF1 ZNF2 GLIS2 E2F8 KLF13 SP3 GMEB1 SMARCA4 LOC105372397 SPINT2 MAP4K1 PIR31478 GC19P038502
GH19J038616 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +22.1 22061 4.5 HDGF FOXA2 PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 YBX1 YY1 MAP4K1 EIF3K EID2B ZNF781 MED29 CAPN12 ZNF573 HNRNPL DPF1 ENSG00000267152
GH19J038583 Enhancer 0.7 ENCODE 0.4 -12.6 -12573 0.3 HDGF EBF1 IRF4 EED ATF7 IKZF2 CREM RUNX3 SMARCA5 CBFB SARS2 FBXO17 CATSPERG PIR31478 LOC105372397 GC19P038502 RYR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372397 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372397 Gene

Genomic Locations for LOC105372397 Gene
chr19:38,596,346-38,601,694
(GRCh38/hg38)
Size:
5,349 bases
Orientation:
Plus strand
chr19:39,086,986-39,092,334
(GRCh37/hg19)
Size:
5,349 bases
Orientation:
Plus strand

Genomic View for LOC105372397 Gene

Genes around LOC105372397 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372397 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372397 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372397 Gene

Proteins for LOC105372397 Gene

Post-translational modifications for LOC105372397 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372397 Gene

Domains & Families for LOC105372397 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372397 Gene

Function for LOC105372397 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372397 Gene

Localization for LOC105372397 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372397 Gene

Pathways & Interactions for LOC105372397 Gene

SuperPathways for LOC105372397 Gene

No Data Available

Interacting Proteins for LOC105372397 Gene

Gene Ontology (GO) - Biological Process for LOC105372397 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372397 Gene

Drugs & Compounds for LOC105372397 Gene

No Compound Related Data Available

Transcripts for LOC105372397 Gene

mRNA/cDNA for LOC105372397 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372397 Gene

No ASD Table

Relevant External Links for LOC105372397 Gene

GeneLoc Exon Structure for
LOC105372397

Expression for LOC105372397 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372397 Gene

Orthologs for LOC105372397 Gene

Evolution for LOC105372397 Gene

ENSEMBL:
Gene Tree for LOC105372397 (if available)
TreeFam:
Gene Tree for LOC105372397 (if available)

No data available for Orthologs for LOC105372397 Gene

Paralogs for LOC105372397 Gene

No data available for Paralogs for LOC105372397 Gene

Variants for LOC105372397 Gene

Sequence variations from dbSNP and Humsavar for LOC105372397 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000063226 -- 38,598,179(+) C/T intron_variant
rs1000248709 -- 38,596,573(+) C/T intron_variant
rs1001014316 -- 38,599,256(+) G/A intron_variant
rs1001364338 -- 38,601,788(+) TTTTTTTT/TTTTTTT downstream_transcript_variant
rs1001539107 -- 38,595,825(+) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372397 Gene

Disorders for LOC105372397 Gene

Additional Disease Information for LOC105372397

No disorders were found for LOC105372397 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105372397 Gene

Publications for LOC105372397 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC105372397 Gene

Sources for LOC105372397 Gene

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