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Aliases for LOC105372396 Gene

Subcategory (RNA class) for LOC105372396 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372396 Gene

  • Uncharacterized LOC105372396 3

External Ids for LOC105372396 Gene

Previous GeneCards Identifiers for LOC105372396 Gene

  • GC19U902020

Summaries for LOC105372396 Gene

GeneCards Summary for LOC105372396 Gene

LOC105372396 (Uncharacterized LOC105372396) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372396 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372396 Gene

Genomics for LOC105372396 Gene

GeneHancer (GH) Regulatory Elements for LOC105372396 Gene

Promoters and enhancers for LOC105372396 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J038026 Enhancer 0.5 dbSUPER 650.7 +0.7 651 1.6 MITF ZNF121 NFE2 BATF LOC105372396 GC19M039141 SIPA1L3
GH19J038028 Enhancer 0.2 dbSUPER 650.7 -0.9 -925 0.8 LOC105372396 GC19M039155 SIPA1L3
GH19J038043 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.7 -18653 6.7 HDGF PKNOX1 YBX1 IRF4 GLIS2 ZNF143 ATF7 RUNX3 JUNB REST SIPA1L3 ZNF571 ZNF585B HKR1 ZNF527 ZNF573 WDR87 ZNF383 ENSG00000267682 ZNF607
GH19J038022 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +4.1 4053 3.3 USF1 JUN NFYB SCRT2 USF2 ZBTB20 DPF1 SPINT2 LOC105372396 GC19M039141 SIPA1L3
GH19J038030 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.0 -5986 7.6 HDGF PKNOX1 ATF1 RB1 KLF17 IRF4 RAD21 NCOA2 ZNF207 ZNF143 ZNF585B ZNF527 ZNF585A ZFP30 ZNF607 HKR1 ZNF793 ZNF570 ENSG00000267682 ZNF573
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372396 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372396 Gene

Genomic Locations for LOC105372396 Gene
chr19:38,024,951-38,028,428
(GRCh38/hg38)
Size:
3,478 bases
Orientation:
Minus strand

Genomic View for LOC105372396 Gene

Genes around LOC105372396 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372396 Gene

Proteins for LOC105372396 Gene

Post-translational modifications for LOC105372396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372396 Gene

Domains & Families for LOC105372396 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372396 Gene

Function for LOC105372396 Gene

Phenotypes From GWAS Catalog for LOC105372396 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372396 Gene

Localization for LOC105372396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372396 Gene

Pathways & Interactions for LOC105372396 Gene

SuperPathways for LOC105372396 Gene

No Data Available

Interacting Proteins for LOC105372396 Gene

Gene Ontology (GO) - Biological Process for LOC105372396 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372396 Gene

Drugs & Compounds for LOC105372396 Gene

No Compound Related Data Available

Transcripts for LOC105372396 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372396 Gene

No ASD Table

Relevant External Links for LOC105372396 Gene

GeneLoc Exon Structure for
LOC105372396

No data available for mRNA/cDNA for LOC105372396 Gene

Expression for LOC105372396 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372396 Gene

Orthologs for LOC105372396 Gene

No data available for Orthologs and Evolution for LOC105372396 Gene

Paralogs for LOC105372396 Gene

No data available for Paralogs for LOC105372396 Gene

Variants for LOC105372396 Gene

Sequence variations from dbSNP and Humsavar for LOC105372396 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000125390 -- 38,028,547(-) G/T upstream_transcript_variant
rs1000509489 -- 38,027,293(-) A/G upstream_transcript_variant
rs1001983056 -- 38,025,093(-) C/G non_coding_transcript_variant
rs1002989413 -- 38,026,578(-) C/T intron_variant
rs1003406612 -- 38,024,784(-) C/T downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372396 Gene

Disorders for LOC105372396 Gene

No disorders were found for LOC105372396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372396 Gene

Publications for LOC105372396 Gene

No publications were found for LOC105372396 Gene.

Products for LOC105372396 Gene

Sources for LOC105372396 Gene

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