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Aliases for LOC105372278 Gene

Subcategory (RNA class) for LOC105372278 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372278 Gene

  • Uncharacterized LOC105372278 3
  • CTD-2192J16.11 3
  • AC010422.1 5

External Ids for LOC105372278 Gene

Previous GeneCards Identifiers for LOC105372278 Gene

  • GC19U901942

Summaries for LOC105372278 Gene

GeneCards Summary for LOC105372278 Gene

LOC105372278 (Uncharacterized LOC105372278) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372278 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372278 Gene

Genomics for LOC105372278 Gene

GeneHancer (GH) Regulatory Elements for LOC105372278 Gene

Promoters and enhancers for LOC105372278 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012550 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.6 -581 3.3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 ZNF564 LOC105372278 ENSG00000196826 ZNF44 ZNF136 ZNF763 ZNF799 ZNF700 TRMT1 WDR83OS
GH19J012983 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +432.4 432385 3.2 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF136 ZNF625 ZNF442 CCDC130 ZNF564 ZNF844 ZNF799 WDR83OS ZNF709 MRI1
GH19J013005 Enhancer 1.1 Ensembl ENCODE dbSUPER 14.8 +455.2 455197 3.8 CTCF ESRRA RXRA ZIK1 ZSCAN4 ZNF195 ZIC2 HIC1 ZFHX2 IKZF1 LOC105372278 ZNF709 ENSG00000268945 ENSG00000242615 CALR ENSG00000267417 NFIX GC19M012993
GH19J012868 Enhancer 0.6 ENCODE 10.3 +316.5 316515 0.1 PKNOX1 NFYA ZNF621 DDX20 NFYC SP2 ASH1L ZFP69B SP1 GATA3 ZNF20 ZNF878 ZNF44 ZNF433 LOC105372278 ZNF563 SYCE2 ZNF763 HOOK2 MIR6794
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372278 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372278 Gene

Genomic Locations for LOC105372278 Gene
chr19:12,552,417-12,553,644
(GRCh38/hg38)
Size:
1,228 bases
Orientation:
Plus strand
chr19:12,663,411-12,664,458
(GRCh37/hg19)
Size:
1,048 bases
Orientation:
Plus strand

Genomic View for LOC105372278 Gene

Genes around LOC105372278 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372278 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372278 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372278 Gene

Proteins for LOC105372278 Gene

Post-translational modifications for LOC105372278 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372278 Gene

Domains & Families for LOC105372278 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372278 Gene

Function for LOC105372278 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372278 Gene

Localization for LOC105372278 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372278 Gene

Pathways & Interactions for LOC105372278 Gene

SuperPathways for LOC105372278 Gene

No Data Available

Interacting Proteins for LOC105372278 Gene

Gene Ontology (GO) - Biological Process for LOC105372278 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372278 Gene

Drugs & Compounds for LOC105372278 Gene

No Compound Related Data Available

Transcripts for LOC105372278 Gene

mRNA/cDNA for LOC105372278 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372278 Gene

No ASD Table

Relevant External Links for LOC105372278 Gene

GeneLoc Exon Structure for
LOC105372278

Expression for LOC105372278 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372278 Gene

Orthologs for LOC105372278 Gene

Evolution for LOC105372278 Gene

ENSEMBL:
Gene Tree for LOC105372278 (if available)
TreeFam:
Gene Tree for LOC105372278 (if available)

No data available for Orthologs for LOC105372278 Gene

Paralogs for LOC105372278 Gene

No data available for Paralogs for LOC105372278 Gene

Variants for LOC105372278 Gene

Sequence variations from dbSNP and Humsavar for LOC105372278 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000004564 -- 12,550,386(+) T/G upstream_transcript_variant
rs1000678501 -- 12,553,355(+) C/A intron_variant
rs1001066047 -- 12,552,179(+) G/A non_coding_transcript_variant
rs1001913653 -- 12,551,524(+) G/A upstream_transcript_variant
rs1002467444 -- 12,554,302(+) A/T downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372278 Gene

Disorders for LOC105372278 Gene

No disorders were found for LOC105372278 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372278 Gene

Publications for LOC105372278 Gene

No publications were found for LOC105372278 Gene.

Products for LOC105372278 Gene

Sources for LOC105372278 Gene

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