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Aliases for LOC105372273 Gene

Subcategory (RNA class) for LOC105372273 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372273 Gene

  • Uncharacterized LOC105372273 3
  • CTC-510F12.2 3

External Ids for LOC105372273 Gene

Previous GeneCards Identifiers for LOC105372273 Gene

  • GC19U902142

Summaries for LOC105372273 Gene

GeneCards Summary for LOC105372273 Gene

LOC105372273 (Uncharacterized LOC105372273) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105372273 include Adams-Oliver Syndrome 2 and Oliver Syndrome.

Additional gene information for LOC105372273 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372273 Gene

Genomics for LOC105372273 Gene

GeneHancer (GH) Regulatory Elements for LOC105372273 Gene

Promoters and enhancers for LOC105372273 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J011200 Enhancer 1.3 Ensembl ENCODE dbSUPER 600.7 -0.4 -427 5.2 CC2D1A CTCF ZKSCAN8 CBFA2T2 ZNF148 ZNF687 SP5 RAD21 SMARCA4 GLIS2 ENSG00000267082 LOC105372273 ANGPTL8 DOCK6 KANK2
GH19J011205 Enhancer 0.9 Ensembl dbSUPER 0.7 +2.4 2441 0.4 SP1 NKRF ZNF121 ZNF687 CREM MLLT1 IKZF1 BACH1 IKZF2 TRIM22 ANGPTL8 DOCK6 GC19P011210 ENSG00000267082 LOC105372273
GH19J011208 Promoter 0.5 Ensembl 0.7 +4.7 4673 0.2 GC19P011210 ENSG00000279807 LOC105372273 ENSG00000267082 GC19P011217 DOCK6
GH19J011209 Enhancer 0.7 dbSUPER 0.4 +6.5 6495 1.5 CBFA2T2 ZBTB7A ZBTB33 ZNF488 ZEB2 ZNF639 ZNF239 ZNF23 ZNF10 ZBTB10 ENSG00000279807 GC19P011210 ILF3 ZNF627 ZNF441 ZNF625 ZNF136 ZNF844 ENSG00000242615 ZNF788P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372273 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372273 Gene

Genomic Locations for LOC105372273 Gene
chr19:11,203,628-11,216,176
(GRCh38/hg38)
Size:
12,549 bases
Orientation:
Plus strand

Genomic View for LOC105372273 Gene

Genes around LOC105372273 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372273 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372273 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372273 Gene

Proteins for LOC105372273 Gene

Post-translational modifications for LOC105372273 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372273 Gene

Domains & Families for LOC105372273 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372273 Gene

Function for LOC105372273 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372273 Gene

Localization for LOC105372273 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372273 Gene

Pathways & Interactions for LOC105372273 Gene

PathCards logo

SuperPathways for LOC105372273 Gene

No Data Available

Interacting Proteins for LOC105372273 Gene

Gene Ontology (GO) - Biological Process for LOC105372273 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372273 Gene

Drugs & Compounds for LOC105372273 Gene

No Compound Related Data Available

Transcripts for LOC105372273 Gene

mRNA/cDNA for LOC105372273 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372273 Gene

No ASD Table

Relevant External Links for LOC105372273 Gene

GeneLoc Exon Structure for
LOC105372273

Expression for LOC105372273 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372273 Gene

Orthologs for LOC105372273 Gene

No data available for Orthologs and Evolution for LOC105372273 Gene

Paralogs for LOC105372273 Gene

No data available for Paralogs for LOC105372273 Gene

Variants for LOC105372273 Gene

Sequence variations from dbSNP and Humsavar for LOC105372273 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs115035890 uncertain-significance, not specified, not provided 11,201,995(+) C/T upstream_transcript_variant
rs117328686 benign, Adams-Oliver syndrome 2 11,208,960(+) G/A intron_variant
rs1280482569 likely-pathogenic, Inborn genetic diseases 11,211,990(+) CACC/C intron_variant
rs1555688690 pathogenic, Adams-Oliver syndrome 2 11,214,559(+) GATG/GATGGATG intron_variant
rs1555826472 pathogenic, Adams-Oliver syndrome 2 11,209,027(+) GCTCCGC/GC intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372273 Gene

Disorders for LOC105372273 Gene

MalaCards: The human disease database

(3) MalaCards diseases for LOC105372273 Gene - From: GeneCards

Disorder Aliases PubMed IDs
adams-oliver syndrome 2
  • aos2
oliver syndrome
  • postaxial polydactyly and mental retardation
adams-oliver syndrome
  • aos
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105372273: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372273 Gene

Publications for LOC105372273 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

No data available for External Links for LOC105372273 Gene

Products for LOC105372273 Gene

Sources for LOC105372273 Gene

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