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Aliases for LOC105372273 Gene
Data sources for LOC105372273 Gene:
Subcategory (RNA class) for LOC105372273 Gene
lncRNA
Aliases for LOC105372273 Gene
- Uncharacterized LOC105372273 (NCBI Entrez Gene)
- Novel Transcript, Antisense To DOCK6 (Ensembl)
- NONHSAG024818.2 (NONCODE)
- Lnc-ANGPTL8-1 (LNCipedia)
- HSALNG0124001 (LncBook)
- CTC-510F12.2 (NCBI Entrez Gene)
- AC011472.1 (Ensembl)
External Ids for LOC105372273 Gene
- NCBI Entrez Gene: 105372273
- Ensembl: ENSG00000267082
Previous GeneCards Identifiers for LOC105372273 Gene
- GC19U902142
Summaries for LOC105372273 Gene
GeneCards Summary for LOC105372273 Gene
LOC105372273 (Uncharacterized LOC105372273) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC105372273 include Adams-Oliver Syndrome 2 and Oliver Syndrome.
Additional gene information for LOC105372273 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105372273 Gene
Genomics for LOC105372273 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC105372273 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105372273 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC105372273 Gene
Latest Assembly
- chr19:11,202,645-11,216,168
- (GRCh38/hg38)
- Size:
- 13,524 bases
- Orientation:
- Plus strand
Previous Assembly
- chr19:11,314,304-11,326,844
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 12,541 bases
- Orientation:
- Plus strand
- chr19:11,314,304-11,326,844
- (GRCh37/hg19 by Ensembl)
- Size:
- 12,541 bases
- Orientation:
- Plus strand
Genomic View for LOC105372273 Gene
Genes around LOC105372273 on UCSC Golden Path with GeneCards custom track
LOC105372273 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 19p13.2 by Entrez Gene
- 19p13.2 by Ensembl
LOC105372273 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105372273 Gene
Proteins for LOC105372273 Gene
Post-translational modifications for LOC105372273 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC105372273 Gene
Domains & Families for LOC105372273 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105372273 Gene
Function for LOC105372273 Gene
Phenotypes From GWAS Catalog for LOC105372273 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372273 Gene
Localization for LOC105372273 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372273 Gene
Transcripts for LOC105372273 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105372273 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000021CCD9_9606 | lncRNA | 572 | 5 |
RefSeq: NR_134909, Ensembl: ENST00000588634 (view in UCSC) , LncBook: HSALNT0255780, LNCipedia: lnc-ANGPTL8-1:1, NONCODE: NONHSAT061122.2, |
| URS0000D5DCDB_9606 | lncRNA | 446 | 2 |
LncBook: HSALNT0255781, LNCipedia: lnc-ANGPTL8-1:2, |
| URS0001BDDDA5_9606 | lncRNA | 3111 | 1 |
LncBook: HSALNT0255778, |
| URS00009B6523_9606 | lncRNA | 742 | 1 |
NONCODE: NONHSAT179452.1, |
| URS0001BCEA06_9606 | lncRNA | 569 | 1 |
LncBook: HSALNT0255780, |
LOC105372273 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC105372273 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC105372273 Gene
- GeneLoc Exon Structure for
- LOC105372273
Expression for LOC105372273 Gene
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372273 Gene
Orthologs for LOC105372273 Gene
No data available for Orthologs for LOC105372273 Gene
Paralogs for LOC105372273 Gene
No data available for Paralogs for LOC105372273 Gene
Variants for LOC105372273 Gene
Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC105372273 Gene
| SNP ID | Clinical significance and condition | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| 975215 | Likely Benign: Intellectual disability | 11,211,856(+) |
G/T NM_020812.4(DOCK6):c.4671C>A (p.Asn1557Lys) |
MISSENSE | |
| 975221 | Likely Benign: Intellectual disability | 11,204,204(+) |
T/A NM_020812.4(DOCK6):c.5216A>T (p.His1739Leu) |
MISSENSE | |
| 975685 | Likely Benign: Intellectual disability | 11,215,432(+) |
C/T NM_020812.4(DOCK6):c.4061G>A (p.Arg1354Gln) |
MISSENSE | |
| rs112911897 | Benign/Likely Benign: not provided | 11,215,909(+) |
G/A NM_020812.4(DOCK6):c.3913C>T (p.Arg1305Cys) |
MISSENSE | |
| rs117328686 | Benign: Adams-Oliver syndrome 2 | 11,208,960(+) |
G/A NM_020812.4(DOCK6):c.4895C>T (p.Ala1632Val) |
MISSENSE |
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372273 Gene
Disorders for LOC105372273 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| adams-oliver syndrome 2 |
|
|
| oliver syndrome |
|
|
| adams-oliver syndrome |
|
|
Search LOC105372273 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LOC105372273
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LOC105372273 Gene
Publications for LOC105372273 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
No data available for Mastermind for LOC105372273 Gene
Products for LOC105372273 Gene
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- Custom Assay Services
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- Browse OriGene qPCR primer pairs and template standards
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- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC105372273
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC105372273
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- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC105372273
Sources for LOC105372273 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB