Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105372273 Gene

Subcategory (RNA class) for LOC105372273 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105372273 Gene

  • Uncharacterized LOC105372273 3
  • CTC-510F12.2 3
  • AC011472.1 5

External Ids for LOC105372273 Gene

Previous GeneCards Identifiers for LOC105372273 Gene

  • GC19U902142

Summaries for LOC105372273 Gene

GeneCards Summary for LOC105372273 Gene

LOC105372273 (Uncharacterized LOC105372273) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372273 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372273 Gene

Genomics for LOC105372273 Gene

GeneHancer (GH) Regulatory Elements for LOC105372273 Gene

Promoters and enhancers for LOC105372273 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I011202 Enhancer 1.3 Ensembl ENCODE dbSUPER 555.8 +0.1 82 3.1 KLF17 ZNF48 RAD21 RARA GATA2 ARID2 ZNF143 FOS RUNX3 SMARCA5 LOC105372273 ANGPTL8 DOCK6 KANK2 GC19P011210
GH19I011192 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 5.6 -7.4 -7384 7.1 HDGF ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF213 ZNF143 SP3 REST KANK2 LOC105372273 ENSG00000267174 GC19P011173 DOCK6
GH19I011172 Enhancer 0.4 dbSUPER 5.3 -30.0 -29996 3.2 ARHGAP35 ZFP36 GC19P011173 KANK2 LOC105372273 DOCK6
GH19I011200 Enhancer 0.3 dbSUPER 6 -2.4 -2378 1.2 GLIS2 LOC105372273 KANK2 DOCK6
GH19I011209 Enhancer 0.8 dbSUPER 0.4 +6.5 6495 1.5 HDAC1 ZSCAN5A ZSCAN26 ZNF514 BCL11B ZEB1 CTBP1 ZNF23 ZNF366 ZBTB48 ENSG00000279807 GC19P011210 ILF3 ZNF627 ZNF441 ZNF625 ZNF136 ZNF844 ENSG00000242615 ZNF788
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372273 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372273 Gene

Genomic Locations for LOC105372273 Gene
chr19:11,203,628-11,216,176
(GRCh38/hg38)
Size:
12,549 bases
Orientation:
Plus strand
chr19:11,314,304-11,326,844
(GRCh37/hg19)

Genomic View for LOC105372273 Gene

Genes around LOC105372273 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372273 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372273 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372273 Gene

Proteins for LOC105372273 Gene

Post-translational modifications for LOC105372273 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372273 Gene

Domains & Families for LOC105372273 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372273 Gene

Function for LOC105372273 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372273 Gene

Localization for LOC105372273 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372273 Gene

Pathways & Interactions for LOC105372273 Gene

SuperPathways for LOC105372273 Gene

No Data Available

Interacting Proteins for LOC105372273 Gene

Gene Ontology (GO) - Biological Process for LOC105372273 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372273 Gene

Drugs & Compounds for LOC105372273 Gene

No Compound Related Data Available

Transcripts for LOC105372273 Gene

mRNA/cDNA for LOC105372273 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372273 Gene

No ASD Table

Relevant External Links for LOC105372273 Gene

GeneLoc Exon Structure for
LOC105372273

Expression for LOC105372273 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372273 Gene

Orthologs for LOC105372273 Gene

Evolution for LOC105372273 Gene

ENSEMBL:
Gene Tree for LOC105372273 (if available)
TreeFam:
Gene Tree for LOC105372273 (if available)

No data available for Orthologs for LOC105372273 Gene

Paralogs for LOC105372273 Gene

No data available for Paralogs for LOC105372273 Gene

Variants for LOC105372273 Gene

Sequence variations from dbSNP and Humsavar for LOC105372273 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs200472954 likely-pathogenic, Adams-Oliver syndrome 2 11,213,198(+) C/T intron_variant
rs397509399 pathogenic, Adams-Oliver syndrome 2 11,214,650(+) C/G intron_variant
rs112911897 likely-benign, not provided 11,215,909(+) G/A intron_variant
rs147554257 likely-benign, not provided 11,214,408(+) G/A intron_variant
rs377755210 likely-benign, not specified 11,212,095(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372273 Gene

Disorders for LOC105372273 Gene

Additional Disease Information for LOC105372273

No disorders were found for LOC105372273 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105372273 Gene

Publications for LOC105372273 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC105372273 Gene

Sources for LOC105372273 Gene

Content
Loading form....