Aliases for LOC105372273 Gene
Subcategory (RNA class) for LOC105372273 Gene
ncRNA
Quality Score for this RNA gene is
13
External Ids for LOC105372273 Gene
- Entrez Gene: 105372273
Previous GeneCards Identifiers for LOC105372273 Gene
- GC19U902142
Summaries for LOC105372273 Gene
GeneCards Summary for LOC105372273 Gene
LOC105372273 (Uncharacterized LOC105372273) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105372273 include Adams-Oliver Syndrome 2 and Oliver Syndrome.
Additional gene information for LOC105372273 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372273 Gene
Genomics for LOC105372273 Gene
GeneHancer (GH) Regulatory Elements for LOC105372273 Gene
Promoters and enhancers for LOC105372273 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH19J011200 | Enhancer | 1.3 | Ensembl ENCODE dbSUPER | 600.7 | -0.4 | -427 | 5.2 | CC2D1A CTCF ZKSCAN8 CBFA2T2 ZNF148 ZNF687 SP5 RAD21 SMARCA4 GLIS2 | ENSG00000267082 LOC105372273 ANGPTL8 DOCK6 KANK2 | |
| GH19J011205 | Enhancer | 0.9 | Ensembl dbSUPER | 0.7 | +2.4 | 2441 | 0.4 | SP1 NKRF ZNF121 ZNF687 CREM MLLT1 IKZF1 BACH1 IKZF2 TRIM22 | ANGPTL8 DOCK6 GC19P011210 ENSG00000267082 LOC105372273 | |
| GH19J011208 | Promoter | 0.5 | Ensembl | 0.7 | +4.7 | 4673 | 0.2 | GC19P011210 ENSG00000279807 LOC105372273 ENSG00000267082 GC19P011217 DOCK6 | ||
| GH19J011209 | Enhancer | 0.7 | dbSUPER | 0.4 | +6.5 | 6495 | 1.5 | CBFA2T2 ZBTB7A ZBTB33 ZNF488 ZEB2 ZNF639 ZNF239 ZNF23 ZNF10 ZBTB10 | ENSG00000279807 GC19P011210 ILF3 ZNF627 ZNF441 ZNF625 ZNF136 ZNF844 ENSG00000242615 ZNF788P |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC105372273 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LOC105372273 Gene
Genomic Locations for LOC105372273 Gene
- chr19:11,203,628-11,216,176
- (GRCh38/hg38)
- Size:
- 12,549 bases
- Orientation:
- Plus strand
Genomic View for LOC105372273 Gene
Genes around LOC105372273 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19p13.2 by Entrez Gene
LOC105372273 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC105372273 Gene
Proteins for LOC105372273 Gene
Post-translational modifications for LOC105372273 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC105372273
- Origene Custom Protein Services for LOC105372273
No data available for DME Specific Peptides for LOC105372273 Gene
Domains & Families for LOC105372273 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372273 Gene
Function for LOC105372273 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC105372273
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372273 Gene
Localization for LOC105372273 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372273 Gene
Transcripts for LOC105372273 Gene
mRNA/cDNA for LOC105372273 Gene
- (1) Additional mRNA sequences :
- (1) RNA Central transcripts :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC105372273 Gene
- GeneLoc Exon Structure for
- LOC105372273
Expression for LOC105372273 Gene
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372273 Gene
Orthologs for LOC105372273 Gene
No data available for Orthologs and Evolution for LOC105372273 Gene
Paralogs for LOC105372273 Gene
No data available for Paralogs for LOC105372273 Gene
Variants for LOC105372273 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs115035890 | uncertain-significance, not specified, not provided | 11,201,995(+) | C/T | upstream_transcript_variant | |
| rs117328686 | benign, Adams-Oliver syndrome 2 | 11,208,960(+) | G/A | intron_variant | |
| rs1280482569 | likely-pathogenic, Inborn genetic diseases | 11,211,990(+) | CACC/C | intron_variant | |
| rs1555688690 | pathogenic, Adams-Oliver syndrome 2 | 11,214,559(+) | GATG/GATGGATG | intron_variant | |
| rs1555826472 | pathogenic, Adams-Oliver syndrome 2 | 11,209,027(+) | GCTCCGC/GC | intron_variant |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372273 Gene
Disorders for LOC105372273 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| adams-oliver syndrome 2 |
|
|
| oliver syndrome |
|
|
| adams-oliver syndrome |
|
|
Search LOC105372273 in MalaCards
View complete list of genes associated with diseases
No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372273 Gene
Publications for LOC105372273 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
No data available for External Links for LOC105372273 Gene
Products for LOC105372273 Gene
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Sources for LOC105372273 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
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