Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105372272 Gene

Subcategory (RNA class) for LOC105372272 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105372272 Gene

  • Uncharacterized LOC105372272 3
  • CTD-2369P2.5 3
  • AC011511.2 5

External Ids for LOC105372272 Gene

Previous GeneCards Identifiers for LOC105372272 Gene

  • GC19U901928

Summaries for LOC105372272 Gene

GeneCards Summary for LOC105372272 Gene

LOC105372272 (Uncharacterized LOC105372272) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372272 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372272 Gene

Genomics for LOC105372272 Gene

GeneHancer (GH) Regulatory Elements for LOC105372272 Gene

Promoters and enhancers for LOC105372272 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I010267 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +14.8 14770 5.6 PKNOX1 SMAD1 MLX ARID4B SIN3A DMAP1 IRF4 YY1 SLC30A9 POLR2B ICAM1 LOC100419831 ZNF559 ZNF699 ZNF846 ILF3 ZNF426 ZNF562 MRPL4 LOC105372272
GH19I010251 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +33.0 32980 2.1 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 ZNF213 MRPL4 DNMT1 ILF3 LOC100128428 LOC100419831 QTRT1 KRI1 ZNF177 ENSG00000267510 ZNF562
GH19I010279 Enhancer 0.4 dbSUPER 0.8 +5.0 4979 0.5 PKNOX1 PRDM10 LOC105372272 ICAM1
GH19I010258 Enhancer 0.8 ENCODE 0.3 +25.3 25335 2.3 HDGF PKNOX1 ARID4B RAD21 TCF12 POLR2B EGR1 SCRT2 ZNF143 FOS ENSG00000267105 GC19P010260 GC19P010259 MRPL4 C19orf66 LOC105372272
GH19I010262 Enhancer 0.7 ENCODE 0.3 +23.8 23818 0.2 SOX13 FOXA2 SAP130 ARID4B CEBPG ZSCAN9 RARA TEAD3 THAP11 GATAD2A ENSG00000267105 GC19P010260 GC19P010259 ICAM1 LOC105372272
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372272 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372272 Gene

Genomic Locations for LOC105372272 Gene
chr19:10,252,268-10,285,108
(GRCh38/hg38)
Size:
32,841 bases
Orientation:
Minus strand
chr19:10,362,944-10,395,784
(GRCh37/hg19)

Genomic View for LOC105372272 Gene

Genes around LOC105372272 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372272 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372272 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372272 Gene

Proteins for LOC105372272 Gene

Post-translational modifications for LOC105372272 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372272 Gene

Domains & Families for LOC105372272 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372272 Gene

Function for LOC105372272 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372272 Gene

Localization for LOC105372272 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372272 Gene

Pathways & Interactions for LOC105372272 Gene

SuperPathways for LOC105372272 Gene

No Data Available

Interacting Proteins for LOC105372272 Gene

Gene Ontology (GO) - Biological Process for LOC105372272 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372272 Gene

Drugs & Compounds for LOC105372272 Gene

No Compound Related Data Available

Transcripts for LOC105372272 Gene

mRNA/cDNA for LOC105372272 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372272 Gene

No ASD Table

Relevant External Links for LOC105372272 Gene

GeneLoc Exon Structure for
LOC105372272

Expression for LOC105372272 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372272 Gene

Orthologs for LOC105372272 Gene

Evolution for LOC105372272 Gene

ENSEMBL:
Gene Tree for LOC105372272 (if available)
TreeFam:
Gene Tree for LOC105372272 (if available)

No data available for Orthologs for LOC105372272 Gene

Paralogs for LOC105372272 Gene

No data available for Paralogs for LOC105372272 Gene

Variants for LOC105372272 Gene

Sequence variations from dbSNP and Humsavar for LOC105372272 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs5491 risk-factor, Malaria, cerebral, susceptibility to 10,274,864(-) A/G/T genic_upstream_transcript_variant, intron_variant
rs375741179 benign, not specified 10,259,609(-) G/A/C downstream_transcript_variant
rs765019295 benign, not specified 10,259,604(-) A/C downstream_transcript_variant
rs1000038062 -- 10,264,497(-) C/G intron_variant
rs1000056928 -- 10,260,989(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372272 Gene

Disorders for LOC105372272 Gene

No disorders were found for LOC105372272 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372272 Gene

Publications for LOC105372272 Gene

No publications were found for LOC105372272 Gene.

Products for LOC105372272 Gene

Sources for LOC105372272 Gene

Content
Loading form....