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Aliases for LOC105372253 Gene

Subcategory (RNA class) for LOC105372253 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105372253 Gene

  • Uncharacterized LOC105372253 3
  • LLNLR-304G9.1 3
  • AC005790.1 5

External Ids for LOC105372253 Gene

Previous GeneCards Identifiers for LOC105372253 Gene

  • GC19U901921

Summaries for LOC105372253 Gene

GeneCards Summary for LOC105372253 Gene

LOC105372253 (Uncharacterized LOC105372253) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372253 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372253 Gene

Genomics for LOC105372253 Gene

GeneHancer (GH) Regulatory Elements for LOC105372253 Gene

Promoters and enhancers for LOC105372253 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J005292 Promoter/Enhancer 1.4 Ensembl ENCODE 650.7 0.0 -10 2.3 HDGF RB1 KLF17 MZF1 SIN3A BMI1 ETS1 ZNF335 GLIS2 EGR1 LOC105372253 ENSG00000267030 SAFB2 DUS3L ENSG00000267769 SNRPEP4 ENSG00000267571 PTPRS RANBP3 SAFB
GH19J005291 Enhancer 0.6 ENCODE 650.7 -1.3 -1348 0.2 SMARCA5 HDGF BCOR ZNF189 DACH1 ZMYM3 ZNF398 GLIS1 PATZ1 ZNF143 LOC105372253 RPL32P34 PTPRS
GH19J005293 Enhancer 0.6 ENCODE 650.7 -1.7 -1726 0.2 HDGF ZNF189 DACH1 ZNF16 ZNF398 ELF1 PATZ1 KDM1A LOC105372253 SNRPEP4 DUS3L RPL32P34 PTPRS
GH19J005308 Enhancer 1.2 Ensembl ENCODE 0.4 +15.8 15764 1.6 HNRNPUL1 SMAD1 FEZF1 ZNF2 YY1 POLR2B ZNF213 KLF13 SP3 REST DUS3L ENSG00000267030 ENSG00000267571 SAFB VMAC ENSG00000267255 RANBP3 ENSG00000267769 SAFB2 KDM4B
GH19J005321 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 +28.9 28913 0.8 RB1 RAD21 KLF5 EGR1 ZNF207 ZNF143 ETV6 ATF7 IKZF2 RUNX3 PTPRS LOC105372252 LOC105372253
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105372253 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372253 Gene

Genomic Locations for LOC105372253 Gene
chr19:5,293,413-5,294,696
(GRCh38/hg38)
Size:
1,284 bases
Orientation:
Plus strand

Genomic View for LOC105372253 Gene

Genes around LOC105372253 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372253 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372253 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372253 Gene

Proteins for LOC105372253 Gene

Post-translational modifications for LOC105372253 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372253 Gene

Domains & Families for LOC105372253 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372253 Gene

Function for LOC105372253 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372253 Gene

Localization for LOC105372253 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372253 Gene

Pathways & Interactions for LOC105372253 Gene

SuperPathways for LOC105372253 Gene

No Data Available

Interacting Proteins for LOC105372253 Gene

Gene Ontology (GO) - Biological Process for LOC105372253 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372253 Gene

Drugs & Compounds for LOC105372253 Gene

No Compound Related Data Available

Transcripts for LOC105372253 Gene

mRNA/cDNA for LOC105372253 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372253 Gene

No ASD Table

Relevant External Links for LOC105372253 Gene

GeneLoc Exon Structure for
LOC105372253

Expression for LOC105372253 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372253 Gene

Orthologs for LOC105372253 Gene

Evolution for LOC105372253 Gene

ENSEMBL:
Gene Tree for LOC105372253 (if available)
TreeFam:
Gene Tree for LOC105372253 (if available)

No data available for Orthologs for LOC105372253 Gene

Paralogs for LOC105372253 Gene

No data available for Paralogs for LOC105372253 Gene

Variants for LOC105372253 Gene

Sequence variations from dbSNP and Humsavar for LOC105372253 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001330071 -- 5,291,542(+) T/C upstream_transcript_variant
rs1001598529 -- 5,293,456(+) G/T non_coding_transcript_variant
rs1001672067 -- 5,293,299(+) GGGG/GGGGG upstream_transcript_variant
rs1001935490 -- 5,292,644(+) C/A upstream_transcript_variant
rs1001997802 -- 5,292,449(+) CTCT/CT upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372253 Gene

Disorders for LOC105372253 Gene

No disorders were found for LOC105372253 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372253 Gene

Publications for LOC105372253 Gene

No publications were found for LOC105372253 Gene.

Products for LOC105372253 Gene

Sources for LOC105372253 Gene

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