Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105372252 Gene

Subcategory (RNA class) for LOC105372252 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105372252 Gene

  • Uncharacterized LOC105372252 3

External Ids for LOC105372252 Gene

Previous GeneCards Identifiers for LOC105372252 Gene

  • GC19U902076

Summaries for LOC105372252 Gene

GeneCards Summary for LOC105372252 Gene

LOC105372252 (Uncharacterized LOC105372252) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372252 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372252 Gene

Genomics for LOC105372252 Gene

GeneHancer (GH) Regulatory Elements for LOC105372252 Gene

Promoters and enhancers for LOC105372252 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I005336 Enhancer 0.6 FANTOM5 550.8 -0.1 -69 0.6 IKZF1 VEZF1 IKZF2 RUNX3 SPI1 LOC105372252 PTPRS LOC105372253
GH19I005337 Enhancer 0.2 FANTOM5 550.8 +0.8 752 0.1 LOC105372252 PTPRS HSD11B1L
GH19I005339 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.8 +4.0 3986 1.9 CLOCK MLX ARNT ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF766 ZNF143 PTPRS ENSG00000267030 RANBP3 SAFB2 ENSG00000267571 SNRPEP4 SAFB HDGFL2 DUS3L HSD11B1L
GH19I005338 Enhancer 0.9 FANTOM5 ENCODE 0.8 +2.2 2233 1 CTCF NR2F1 ZIC2 RAD21 CTBP1 POLR2A GLIS1 ZNF512 PRDM10 IKZF2 PTPRS LOC105372252
GH19I005321 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.4 -14.1 -14121 0.8 RB1 RAD21 KLF5 EGR1 ZNF207 ZNF143 ETV6 ATF7 IKZF2 RUNX3 PTPRS LOC105372252 LOC105372253
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372252 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372252 Gene

Genomic Locations for LOC105372252 Gene
chr19:5,336,447-5,338,448
(GRCh38/hg38)
Size:
2,002 bases
Orientation:
Plus strand

Genomic View for LOC105372252 Gene

Genes around LOC105372252 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372252 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372252 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372252 Gene

Proteins for LOC105372252 Gene

Post-translational modifications for LOC105372252 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372252 Gene

Domains & Families for LOC105372252 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372252 Gene

Function for LOC105372252 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372252 Gene

Localization for LOC105372252 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372252 Gene

Pathways & Interactions for LOC105372252 Gene

SuperPathways for LOC105372252 Gene

No Data Available

Interacting Proteins for LOC105372252 Gene

Gene Ontology (GO) - Biological Process for LOC105372252 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372252 Gene

Drugs & Compounds for LOC105372252 Gene

No Compound Related Data Available

Transcripts for LOC105372252 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372252 Gene

No ASD Table

Relevant External Links for LOC105372252 Gene

GeneLoc Exon Structure for
LOC105372252

No data available for mRNA/cDNA for LOC105372252 Gene

Expression for LOC105372252 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372252 Gene

Orthologs for LOC105372252 Gene

No data available for Orthologs and Evolution for LOC105372252 Gene

Paralogs for LOC105372252 Gene

No data available for Paralogs for LOC105372252 Gene

Variants for LOC105372252 Gene

Sequence variations from dbSNP and Humsavar for LOC105372252 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000036264 -- 5,337,028(+) C/T intron_variant
rs1000093372 -- 5,332,275(+) G/A upstream_transcript_variant
rs1000102828 -- 5,338,474(+) G/T non_coding_transcript_variant
rs1000387378 -- 5,335,117(+) C/T non_coding_transcript_variant
rs1000514927 -- 5,337,184(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372252 Gene

Disorders for LOC105372252 Gene

No disorders were found for LOC105372252 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372252 Gene

Publications for LOC105372252 Gene

No publications were found for LOC105372252 Gene.

Products for LOC105372252 Gene

Sources for LOC105372252 Gene

Content
Loading form....