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Aliases for LOC105372249 Gene

Subcategory (RNA class) for LOC105372249 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105372249 Gene

  • Uncharacterized LOC105372249 3

External Ids for LOC105372249 Gene

Previous GeneCards Identifiers for LOC105372249 Gene

  • GC19U901949

Summaries for LOC105372249 Gene

GeneCards Summary for LOC105372249 Gene

LOC105372249 (Uncharacterized LOC105372249) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105372249 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105372249 Gene

Genomics for LOC105372249 Gene

GeneHancer (GH) Regulatory Elements for LOC105372249 Gene

Promoters and enhancers for LOC105372249 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I004579 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 +0.5 535 2.9 FOXA2 RB1 NFRKB ARID4B KLF17 ZNF48 GLIS2 EGR1 ZNF143 ZNF391 SEMA6B LOC105372249
GH19I004582 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +3.4 3432 2.3 ARID4B SIN3A SP3 SP5 NFYC ZHX2 MXD4 REST KAT8 PPARGC1A ENSG00000267030 ENSG00000267138 ENSG00000267769 CACTIN ENSG00000267205 SEMA6B LOC105372249 LOC100287614
GH19I004574 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.2 -5213 2.5 HDGF PKNOX1 ARNT ARID4B FEZF1 ZNF2 ZBTB7B ZNF213 ZNF143 ZNF548 CACTIN CACTIN-AS1 APBA3 CCDC94 TICAM1 ENSG00000267030 DPP9-AS1 ENSG00000269807 ENSG00000267769 KDM4B
GH19I004577 Enhancer 0.8 ENCODE 0.8 -3.2 -3172 0.2 HDGF ZNF76 DEAF1 ZNF335 CC2D1A GLIS2 PATZ1 ZNF143 PRDM10 KLF8 LOC105372249 SEMA6B GC19P004547
GH19I004567 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.9 -12895 0.8 HDAC1 HDGF RB1 INSM2 KLF17 ZNF2 ZBTB7B RAD21 ZNF121 ZNF366 CACTIN SEMA6B TICAM1 CCDC94 CACTIN-AS1 KDM4B LOC105372249 GC19P004547
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105372249 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105372249 Gene

Genomic Locations for LOC105372249 Gene
chr19:4,580,696-4,586,023
(GRCh38/hg38)
Size:
5,328 bases
Orientation:
Plus strand

Genomic View for LOC105372249 Gene

Genes around LOC105372249 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105372249 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105372249 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105372249 Gene

Proteins for LOC105372249 Gene

Post-translational modifications for LOC105372249 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105372249 Gene

Domains & Families for LOC105372249 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105372249 Gene

Function for LOC105372249 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105372249 Gene

Localization for LOC105372249 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105372249 Gene

Pathways & Interactions for LOC105372249 Gene

SuperPathways for LOC105372249 Gene

No Data Available

Interacting Proteins for LOC105372249 Gene

Gene Ontology (GO) - Biological Process for LOC105372249 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105372249 Gene

Drugs & Compounds for LOC105372249 Gene

No Compound Related Data Available

Transcripts for LOC105372249 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105372249 Gene

No ASD Table

Relevant External Links for LOC105372249 Gene

GeneLoc Exon Structure for
LOC105372249

No data available for mRNA/cDNA for LOC105372249 Gene

Expression for LOC105372249 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105372249 Gene

Orthologs for LOC105372249 Gene

No data available for Orthologs and Evolution for LOC105372249 Gene

Paralogs for LOC105372249 Gene

No data available for Paralogs for LOC105372249 Gene

Variants for LOC105372249 Gene

Sequence variations from dbSNP and Humsavar for LOC105372249 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000074501 -- 4,578,103(+) G/T upstream_transcript_variant
rs1000280679 -- 4,585,828(+) G/A non_coding_transcript_variant
rs1000322073 -- 4,584,023(+) G/A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000402965 -- 4,581,467(+) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000434203 -- 4,580,994(+) CCCCCCC/CCCCCC genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105372249 Gene

Disorders for LOC105372249 Gene

No disorders were found for LOC105372249 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105372249 Gene

Publications for LOC105372249 Gene

No publications were found for LOC105372249 Gene.

Products for LOC105372249 Gene

Sources for LOC105372249 Gene

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